Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS32715 and ECOLIN_RS05545 overlap by 44 nucleotides ECOLIN_RS05545 and ECOLIN_RS05550 are separated by 75 nucleotides ECOLIN_RS05550 and ECOLIN_RS27965 are separated by 49 nucleotides ECOLIN_RS27965 and ECOLIN_RS32150 are separated by 40 nucleotides ECOLIN_RS32150 and ECOLIN_RS32720 are separated by 43 nucleotides ECOLIN_RS32720 and ECOLIN_RS27970 are separated by 36 nucleotides ECOLIN_RS27970 and ECOLIN_RS33380 are separated by 271 nucleotides
ECOLIN_RS32715: ECOLIN_RS32715 - hemagglutinin repeat-containing protein, at 1,132,119 to 1,137,481
_RS32715
ECOLIN_RS05545: ECOLIN_RS05545 - hypothetical protein, at 1,137,438 to 1,137,926
_RS05545
ECOLIN_RS05550: ECOLIN_RS05550 - adhesin, at 1,138,002 to 1,138,364
_RS05550
ECOLIN_RS27965: ECOLIN_RS27965 - hypothetical protein, at 1,138,414 to 1,138,605
_RS27965
ECOLIN_RS32150: ECOLIN_RS32150 - hypothetical protein, at 1,138,646 to 1,138,828
_RS32150
ECOLIN_RS32720: ECOLIN_RS32720 - hypothetical protein, at 1,138,872 to 1,139,021
_RS32720
ECOLIN_RS27970: ECOLIN_RS27970 - hypothetical protein, at 1,139,058 to 1,139,249
_RS27970
ECOLIN_RS33380: ECOLIN_RS33380 - DUF6862 domain-containing protein, at 1,139,521 to 1,139,679
_RS33380
Position (kb) 1138
1139 Strain fitness (log2 ratio) -1
0
1 at 1138.102 kb on + strand, within ECOLIN_RS05550
Per-strain Table
Or see this region's nucleotide sequence