Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS12145

Experiment: Bas10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS12140 and ECOLIN_RS32355 are separated by 308 nucleotidesECOLIN_RS32355 and ECOLIN_RS12145 are separated by 200 nucleotidesECOLIN_RS12145 and ECOLIN_RS12150 are separated by 67 nucleotides ECOLIN_RS12140: ECOLIN_RS12140 - polysaccharide export protein Wza, at 2,396,813 to 2,397,952 _RS12140 ECOLIN_RS32355: ECOLIN_RS32355 - hypothetical protein, at 2,398,261 to 2,398,410 _RS32355 ECOLIN_RS12145: ECOLIN_RS12145 - TerC family protein, at 2,398,611 to 2,400,194 _RS12145 ECOLIN_RS12150: ECOLIN_RS12150 - outer membrane assembly protein AsmA, at 2,400,262 to 2,402,115 _RS12150 Position (kb) 2398 2399 2400 2401Strain fitness (log2 ratio) -1 0 1at 2398.510 kb on + strandat 2399.102 kb on + strand, within ECOLIN_RS12145

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas10
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2,398,510 + +0.1
2,399,102 + ECOLIN_RS12145 0.31 +0.8

Or see this region's nucleotide sequence