Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS10980

Experiment: Bas10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECOLIN_RS10975 and ECOLIN_RS10980 are separated by 319 nucleotidesECOLIN_RS10980 and ECOLIN_RS10985 are separated by 265 nucleotides ECOLIN_RS10975: ECOLIN_RS10975 - RNA polymerase sigma factor FliA, at 2,129,299 to 2,130,018 _RS10975 ECOLIN_RS10980: ECOLIN_RS10980 - FliC/FljB family flagellin, at 2,130,338 to 2,132,125 _RS10980 ECOLIN_RS10985: ECOLIN_RS10985 - flagellar filament capping protein FliD, at 2,132,391 to 2,133,797 _RS10985 Position (kb) 2130 2131 2132 2133Strain fitness (log2 ratio) -1 0 1at 2129.860 kb on - strand, within ECOLIN_RS10975at 2129.961 kb on - strandat 2131.208 kb on - strand, within ECOLIN_RS10980at 2131.208 kb on - strand, within ECOLIN_RS10980at 2132.523 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas10
remove
2,129,860 - ECOLIN_RS10975 0.78 +0.4
2,129,961 - -0.0
2,131,208 - ECOLIN_RS10980 0.49 +0.3
2,131,208 - ECOLIN_RS10980 0.49 +1.2
2,132,523 - +0.3

Or see this region's nucleotide sequence