Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS01500 and ECOLIN_RS32065 are separated by 49 nucleotides ECOLIN_RS32065 and ECOLIN_RS01510 are separated by 67 nucleotides ECOLIN_RS01510 and ECOLIN_RS01515 are separated by 319 nucleotides ECOLIN_RS01515 and ECOLIN_RS01520 are separated by 241 nucleotides
ECOLIN_RS01500: ECOLIN_RS01500 - inovirus-type Gp2 protein, at 288,898 to 289,464
_RS01500
ECOLIN_RS32065: ECOLIN_RS32065 - hypothetical protein, at 289,514 to 289,784
_RS32065
ECOLIN_RS01510: ECOLIN_RS01510 - AlpA family transcriptional regulator, at 289,852 to 290,049
_RS01510
ECOLIN_RS01515: ECOLIN_RS01515 - RpiB/LacA/LacB family sugar-phosphate isomerase, at 290,369 to 291,007
_RS01515
ECOLIN_RS01520: ECOLIN_RS01520 - oligogalacturonate lyase family protein, at 291,249 to 292,421
_RS01520
Position (kb) 290
291
292 Strain fitness (log2 ratio) -1
0
1
2 at 289.388 kb on + strand, within ECOLIN_RS01500 at 289.504 kb on - strand at 289.515 kb on + strand at 289.515 kb on + strand at 289.670 kb on + strand, within ECOLIN_RS32065 at 289.723 kb on - strand, within ECOLIN_RS32065 at 289.860 kb on + strand at 289.919 kb on - strand, within ECOLIN_RS01510 at 289.919 kb on - strand, within ECOLIN_RS01510 at 290.067 kb on - strand at 290.122 kb on + strand at 290.792 kb on - strand, within ECOLIN_RS01515 at 290.901 kb on - strand, within ECOLIN_RS01515
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 289,388 + ECOLIN_RS01500 0.86 -0.1 289,504 - +1.7 289,515 + +0.2 289,515 + +0.1 289,670 + ECOLIN_RS32065 0.58 -0.1 289,723 - ECOLIN_RS32065 0.77 -0.8 289,860 + -1.4 289,919 - ECOLIN_RS01510 0.34 +1.9 289,919 - ECOLIN_RS01510 0.34 +0.4 290,067 - -0.5 290,122 + -0.1 290,792 - ECOLIN_RS01515 0.66 -0.5 290,901 - ECOLIN_RS01515 0.83 -0.2
Or see this region's nucleotide sequence