Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS24245 and ECOLIN_RS24250 are separated by 81 nucleotides ECOLIN_RS24250 and ECOLIN_RS24255 are separated by 103 nucleotides ECOLIN_RS24255 and ECOLIN_RS24260 are separated by 204 nucleotides ECOLIN_RS24260 and ECOLIN_RS24265 are separated by 38 nucleotides
ECOLIN_RS24245: ECOLIN_RS24245 - protease modulator HflC, at 4,876,318 to 4,877,322
_RS24245
ECOLIN_RS24250: ECOLIN_RS24250 - DUF2065 domain-containing protein, at 4,877,404 to 4,877,601
_RS24250
ECOLIN_RS24255: ECOLIN_RS24255 - adenylosuccinate synthase, at 4,877,705 to 4,879,003
_RS24255
ECOLIN_RS24260: ECOLIN_RS24260 - nitric oxide-sensing transcriptional repressor NsrR, at 4,879,208 to 4,879,633
_RS24260
ECOLIN_RS24265: ECOLIN_RS24265 - ribonuclease R, at 4,879,672 to 4,882,113
_RS24265
Position (kb) 4877
4878
4879
4880 Strain fitness (log2 ratio) -1
0
1
2 at 4877.576 kb on - strand, within ECOLIN_RS24250 at 4877.576 kb on - strand, within ECOLIN_RS24250 at 4877.799 kb on + strand at 4877.869 kb on + strand, within ECOLIN_RS24255 at 4877.881 kb on + strand, within ECOLIN_RS24255 at 4877.882 kb on - strand, within ECOLIN_RS24255 at 4878.206 kb on + strand, within ECOLIN_RS24255 at 4878.479 kb on + strand, within ECOLIN_RS24255 at 4878.899 kb on + strand at 4878.899 kb on + strand at 4878.964 kb on + strand at 4879.001 kb on + strand at 4879.051 kb on + strand at 4879.051 kb on + strand at 4879.051 kb on + strand at 4879.168 kb on + strand at 4879.169 kb on - strand at 4879.170 kb on + strand at 4879.171 kb on - strand at 4879.171 kb on - strand at 4879.254 kb on - strand, within ECOLIN_RS24260 at 4879.354 kb on + strand, within ECOLIN_RS24260 at 4879.368 kb on - strand, within ECOLIN_RS24260 at 4879.432 kb on + strand, within ECOLIN_RS24260 at 4879.432 kb on + strand, within ECOLIN_RS24260 at 4879.433 kb on - strand, within ECOLIN_RS24260 at 4879.571 kb on + strand, within ECOLIN_RS24260 at 4879.897 kb on + strand at 4879.897 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 4,877,576 - ECOLIN_RS24250 0.87 -0.2 4,877,576 - ECOLIN_RS24250 0.87 +0.5 4,877,799 + -0.7 4,877,869 + ECOLIN_RS24255 0.13 -1.0 4,877,881 + ECOLIN_RS24255 0.14 -1.4 4,877,882 - ECOLIN_RS24255 0.14 +2.2 4,878,206 + ECOLIN_RS24255 0.39 -0.5 4,878,479 + ECOLIN_RS24255 0.60 -1.3 4,878,899 + -0.7 4,878,899 + -0.6 4,878,964 + -0.3 4,879,001 + +0.4 4,879,051 + -0.0 4,879,051 + -0.1 4,879,051 + +0.3 4,879,168 + +0.1 4,879,169 - -0.9 4,879,170 + -0.5 4,879,171 - +0.1 4,879,171 - -0.8 4,879,254 - ECOLIN_RS24260 0.11 +1.0 4,879,354 + ECOLIN_RS24260 0.34 -0.1 4,879,368 - ECOLIN_RS24260 0.38 -0.2 4,879,432 + ECOLIN_RS24260 0.53 -0.4 4,879,432 + ECOLIN_RS24260 0.53 -0.3 4,879,433 - ECOLIN_RS24260 0.53 -0.6 4,879,571 + ECOLIN_RS24260 0.85 -0.0 4,879,897 + -1.6 4,879,897 + +0.6
Or see this region's nucleotide sequence