Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS22500 and ECOLIN_RS22505 are separated by 73 nucleotides ECOLIN_RS22505 and ECOLIN_RS22510 overlap by 4 nucleotides ECOLIN_RS22510 and ECOLIN_RS22515 are separated by 285 nucleotides
ECOLIN_RS22500: ECOLIN_RS22500 - HTH-type transcriptional activator RhaS, at 4,520,532 to 4,521,368
_RS22500
ECOLIN_RS22505: ECOLIN_RS22505 - HTH-type transcriptional activator RhaR, at 4,521,442 to 4,522,290
_RS22505
ECOLIN_RS22510: ECOLIN_RS22510 - L-rhamnose/proton symporter RhaT, at 4,522,287 to 4,523,321
_RS22510
ECOLIN_RS22515: ECOLIN_RS22515 - superoxide dismutase [Mn], at 4,523,607 to 4,524,227
_RS22515
Position (kb) 4522
4523
4524 Strain fitness (log2 ratio) -1
0
1 at 4521.387 kb on - strand at 4521.392 kb on + strand at 4521.392 kb on + strand at 4521.393 kb on - strand at 4521.543 kb on + strand, within ECOLIN_RS22505 at 4521.544 kb on - strand, within ECOLIN_RS22505 at 4521.544 kb on - strand, within ECOLIN_RS22505 at 4521.596 kb on + strand, within ECOLIN_RS22505 at 4521.640 kb on + strand, within ECOLIN_RS22505 at 4521.703 kb on - strand, within ECOLIN_RS22505 at 4521.706 kb on + strand, within ECOLIN_RS22505 at 4521.794 kb on + strand, within ECOLIN_RS22505 at 4521.979 kb on - strand, within ECOLIN_RS22505 at 4522.111 kb on + strand, within ECOLIN_RS22505 at 4522.144 kb on + strand, within ECOLIN_RS22505 at 4522.316 kb on + strand at 4522.329 kb on - strand at 4522.422 kb on + strand, within ECOLIN_RS22510 at 4522.422 kb on + strand, within ECOLIN_RS22510 at 4522.423 kb on - strand, within ECOLIN_RS22510 at 4522.426 kb on + strand, within ECOLIN_RS22510 at 4522.426 kb on + strand, within ECOLIN_RS22510 at 4522.426 kb on + strand, within ECOLIN_RS22510 at 4522.426 kb on + strand, within ECOLIN_RS22510 at 4522.427 kb on - strand, within ECOLIN_RS22510 at 4522.456 kb on + strand, within ECOLIN_RS22510 at 4522.456 kb on + strand, within ECOLIN_RS22510 at 4522.456 kb on + strand, within ECOLIN_RS22510 at 4522.456 kb on + strand, within ECOLIN_RS22510 at 4522.496 kb on - strand, within ECOLIN_RS22510 at 4522.672 kb on + strand, within ECOLIN_RS22510 at 4522.673 kb on - strand, within ECOLIN_RS22510 at 4522.673 kb on - strand, within ECOLIN_RS22510 at 4522.869 kb on + strand, within ECOLIN_RS22510 at 4522.934 kb on + strand, within ECOLIN_RS22510 at 4522.994 kb on + strand, within ECOLIN_RS22510 at 4522.995 kb on - strand, within ECOLIN_RS22510 at 4523.108 kb on + strand, within ECOLIN_RS22510 at 4523.128 kb on + strand, within ECOLIN_RS22510 at 4523.131 kb on + strand, within ECOLIN_RS22510 at 4523.152 kb on - strand, within ECOLIN_RS22510 at 4523.255 kb on - strand at 4523.545 kb on - strand at 4523.546 kb on + strand at 4523.606 kb on + strand at 4523.613 kb on + strand at 4523.614 kb on - strand at 4523.709 kb on + strand, within ECOLIN_RS22515 at 4523.710 kb on - strand, within ECOLIN_RS22515 at 4523.939 kb on + strand, within ECOLIN_RS22515 at 4523.940 kb on - strand, within ECOLIN_RS22515 at 4524.126 kb on + strand, within ECOLIN_RS22515 at 4524.129 kb on + strand, within ECOLIN_RS22515 at 4524.130 kb on - strand, within ECOLIN_RS22515 at 4524.130 kb on - strand, within ECOLIN_RS22515 at 4524.164 kb on + strand, within ECOLIN_RS22515
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 4,521,387 - +0.1 4,521,392 + +0.4 4,521,392 + -1.7 4,521,393 - +0.2 4,521,543 + ECOLIN_RS22505 0.12 +0.0 4,521,544 - ECOLIN_RS22505 0.12 +0.4 4,521,544 - ECOLIN_RS22505 0.12 +0.3 4,521,596 + ECOLIN_RS22505 0.18 +0.0 4,521,640 + ECOLIN_RS22505 0.23 +0.0 4,521,703 - ECOLIN_RS22505 0.31 -0.1 4,521,706 + ECOLIN_RS22505 0.31 -0.2 4,521,794 + ECOLIN_RS22505 0.41 +0.4 4,521,979 - ECOLIN_RS22505 0.63 +0.7 4,522,111 + ECOLIN_RS22505 0.79 +0.1 4,522,144 + ECOLIN_RS22505 0.83 -0.4 4,522,316 + +0.5 4,522,329 - +0.0 4,522,422 + ECOLIN_RS22510 0.13 +0.4 4,522,422 + ECOLIN_RS22510 0.13 +0.9 4,522,423 - ECOLIN_RS22510 0.13 -0.3 4,522,426 + ECOLIN_RS22510 0.13 +0.0 4,522,426 + ECOLIN_RS22510 0.13 +0.4 4,522,426 + ECOLIN_RS22510 0.13 +0.4 4,522,426 + ECOLIN_RS22510 0.13 -0.0 4,522,427 - ECOLIN_RS22510 0.14 -0.2 4,522,456 + ECOLIN_RS22510 0.16 -0.2 4,522,456 + ECOLIN_RS22510 0.16 -0.5 4,522,456 + ECOLIN_RS22510 0.16 +0.1 4,522,456 + ECOLIN_RS22510 0.16 -0.2 4,522,496 - ECOLIN_RS22510 0.20 +0.0 4,522,672 + ECOLIN_RS22510 0.37 +0.2 4,522,673 - ECOLIN_RS22510 0.37 +0.3 4,522,673 - ECOLIN_RS22510 0.37 -1.3 4,522,869 + ECOLIN_RS22510 0.56 +0.2 4,522,934 + ECOLIN_RS22510 0.63 -0.7 4,522,994 + ECOLIN_RS22510 0.68 +0.1 4,522,995 - ECOLIN_RS22510 0.68 +0.4 4,523,108 + ECOLIN_RS22510 0.79 -0.2 4,523,128 + ECOLIN_RS22510 0.81 -0.2 4,523,131 + ECOLIN_RS22510 0.82 +0.0 4,523,152 - ECOLIN_RS22510 0.84 +0.1 4,523,255 - +0.3 4,523,545 - +0.1 4,523,546 + +0.4 4,523,606 + +0.7 4,523,613 + -0.1 4,523,614 - +0.0 4,523,709 + ECOLIN_RS22515 0.16 +0.1 4,523,710 - ECOLIN_RS22515 0.17 -0.4 4,523,939 + ECOLIN_RS22515 0.53 +0.2 4,523,940 - ECOLIN_RS22515 0.54 +0.1 4,524,126 + ECOLIN_RS22515 0.84 -0.0 4,524,129 + ECOLIN_RS22515 0.84 +0.2 4,524,130 - ECOLIN_RS22515 0.84 -0.5 4,524,130 - ECOLIN_RS22515 0.84 +0.1 4,524,164 + ECOLIN_RS22515 0.90 -0.1
Or see this region's nucleotide sequence