Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS03005

Experiment: Bas10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS03000 and ECOLIN_RS03005 are separated by 316 nucleotidesECOLIN_RS03005 and ECOLIN_RS03010 are separated by 9 nucleotides ECOLIN_RS03000: ECOLIN_RS03000 - ureidoglycolate dehydrogenase, at 619,231 to 620,280 _RS03000 ECOLIN_RS03005: ECOLIN_RS03005 - acyl-CoA synthetase FdrA, at 620,597 to 622,264 _RS03005 ECOLIN_RS03010: ECOLIN_RS03010 - DUF1116 domain-containing protein, at 622,274 to 623,533 _RS03010 Position (kb) 620 621 622 623Strain fitness (log2 ratio) -1 0 1 2 3at 620.740 kb on + strandat 621.412 kb on + strand, within ECOLIN_RS03005at 621.456 kb on + strand, within ECOLIN_RS03005at 621.461 kb on + strand, within ECOLIN_RS03005at 622.248 kb on + strandat 622.906 kb on + strand, within ECOLIN_RS03010at 623.056 kb on + strand, within ECOLIN_RS03010

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas10
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620,740 + +0.7
621,412 + ECOLIN_RS03005 0.49 +0.4
621,456 + ECOLIN_RS03005 0.51 +0.7
621,461 + ECOLIN_RS03005 0.52 -0.1
622,248 + +2.2
622,906 + ECOLIN_RS03010 0.50 +3.0
623,056 + ECOLIN_RS03010 0.62 +0.2

Or see this region's nucleotide sequence