Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS02965

Experiment: Bas10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS02955 and ECOLIN_RS02960 are separated by 12 nucleotidesECOLIN_RS02960 and ECOLIN_RS02965 are separated by 99 nucleotidesECOLIN_RS02965 and ECOLIN_RS02970 are separated by 169 nucleotides ECOLIN_RS02955: ECOLIN_RS02955 - glyoxylate carboligase, at 607,932 to 609,713 _RS02955 ECOLIN_RS02960: ECOLIN_RS02960 - hydroxypyruvate isomerase, at 609,726 to 610,502 _RS02960 ECOLIN_RS02965: ECOLIN_RS02965 - 2-hydroxy-3-oxopropionate reductase, at 610,602 to 611,480 _RS02965 ECOLIN_RS02970: ECOLIN_RS02970 - putative allantoin permease, at 611,650 to 613,104 _RS02970 Position (kb) 610 611 612Strain fitness (log2 ratio) -1 0 1at 609.950 kb on + strand, within ECOLIN_RS02960at 610.874 kb on + strand, within ECOLIN_RS02965at 612.223 kb on + strand, within ECOLIN_RS02970at 612.453 kb on - strand, within ECOLIN_RS02970

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas10
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609,950 + ECOLIN_RS02960 0.29 -0.3
610,874 + ECOLIN_RS02965 0.31 +0.5
612,223 + ECOLIN_RS02970 0.39 -0.2
612,453 - ECOLIN_RS02970 0.55 +0.7

Or see this region's nucleotide sequence