Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS02960

Experiment: Bas10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS02955 and ECOLIN_RS02960 are separated by 12 nucleotidesECOLIN_RS02960 and ECOLIN_RS02965 are separated by 99 nucleotides ECOLIN_RS02955: ECOLIN_RS02955 - glyoxylate carboligase, at 607,932 to 609,713 _RS02955 ECOLIN_RS02960: ECOLIN_RS02960 - hydroxypyruvate isomerase, at 609,726 to 610,502 _RS02960 ECOLIN_RS02965: ECOLIN_RS02965 - 2-hydroxy-3-oxopropionate reductase, at 610,602 to 611,480 _RS02965 Position (kb) 609 610 611Strain fitness (log2 ratio) -1 0 1 2at 608.805 kb on + strand, within ECOLIN_RS02955at 608.805 kb on + strand, within ECOLIN_RS02955at 609.096 kb on + strand, within ECOLIN_RS02955at 609.950 kb on + strand, within ECOLIN_RS02960at 610.874 kb on + strand, within ECOLIN_RS02965

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas10
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608,805 + ECOLIN_RS02955 0.49 +1.9
608,805 + ECOLIN_RS02955 0.49 -0.6
609,096 + ECOLIN_RS02955 0.65 +1.2
609,950 + ECOLIN_RS02960 0.29 -0.3
610,874 + ECOLIN_RS02965 0.31 +0.5

Or see this region's nucleotide sequence