Experiment: Formate/Acetate-Sulfate (60/30-30 mM) minimal without Molybdate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0428 and DVU0429 are separated by 393 nucleotides DVU0429 and DVU0430 are separated by 18 nucleotides
DVU0428: DVU0428 - conserved hypothetical protein (TIGR), at 483,654 to 483,974
DVU0428
DVU0429: DVU0429 - Ech hydrogenase, subunit EchF, putative (TIGR), at 484,368 to 484,769
DVU0429
DVU0430: DVU0430 - Ech hydrogenase, subunit EchE, putative (TIGR), at 484,788 to 485,864
DVU0430
Position (kb) 484
485 Strain fitness (log2 ratio) -2
-1
0
1 at 483.403 kb on - strand at 483.403 kb on - strand at 483.487 kb on + strand at 483.560 kb on - strand at 483.565 kb on + strand at 483.565 kb on - strand at 483.587 kb on + strand at 483.619 kb on - strand at 483.637 kb on + strand at 483.644 kb on + strand at 483.759 kb on - strand, within DVU0428 at 483.780 kb on + strand, within DVU0428 at 483.846 kb on - strand, within DVU0428 at 483.892 kb on + strand, within DVU0428 at 483.977 kb on + strand at 483.977 kb on + strand at 483.985 kb on - strand at 484.052 kb on - strand at 484.087 kb on + strand at 484.100 kb on + strand at 484.108 kb on - strand at 484.111 kb on + strand at 484.169 kb on + strand at 484.177 kb on - strand at 484.207 kb on - strand at 484.243 kb on + strand at 484.251 kb on - strand at 484.268 kb on + strand at 484.275 kb on - strand at 484.278 kb on + strand at 484.297 kb on + strand at 484.517 kb on - strand, within DVU0429 at 484.540 kb on + strand, within DVU0429 at 484.548 kb on - strand, within DVU0429 at 484.554 kb on + strand, within DVU0429 at 484.610 kb on - strand, within DVU0429 at 484.706 kb on - strand, within DVU0429 at 484.706 kb on - strand, within DVU0429 at 484.706 kb on - strand, within DVU0429 at 484.716 kb on - strand, within DVU0429 at 484.850 kb on + strand at 484.858 kb on - strand at 484.918 kb on + strand, within DVU0430 at 484.927 kb on - strand, within DVU0430 at 484.944 kb on - strand, within DVU0430 at 484.976 kb on + strand, within DVU0430 at 485.010 kb on + strand, within DVU0430 at 485.019 kb on - strand, within DVU0430 at 485.045 kb on + strand, within DVU0430 at 485.053 kb on - strand, within DVU0430 at 485.079 kb on + strand, within DVU0430 at 485.087 kb on + strand, within DVU0430 at 485.121 kb on - strand, within DVU0430 at 485.266 kb on + strand, within DVU0430 at 485.267 kb on - strand, within DVU0430 at 485.272 kb on - strand, within DVU0430 at 485.280 kb on - strand, within DVU0430 at 485.477 kb on + strand, within DVU0430 at 485.479 kb on + strand, within DVU0430 at 485.479 kb on + strand, within DVU0430 at 485.479 kb on + strand, within DVU0430 at 485.487 kb on - strand, within DVU0430 at 485.559 kb on + strand, within DVU0430 at 485.658 kb on - strand, within DVU0430 at 485.721 kb on + strand, within DVU0430 at 485.744 kb on + strand, within DVU0430
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) minimal without Molybdate remove 483,403 - +0.0 483,403 - +0.3 483,487 + -0.2 483,560 - -0.1 483,565 + +0.7 483,565 - -0.0 483,587 + +0.6 483,619 - +0.3 483,637 + -1.0 483,644 + -1.1 483,759 - DVU0428 0.33 -0.6 483,780 + DVU0428 0.39 -0.1 483,846 - DVU0428 0.60 +0.6 483,892 + DVU0428 0.74 -0.7 483,977 + +0.4 483,977 + +0.4 483,985 - -0.1 484,052 - -0.0 484,087 + -0.1 484,100 + +0.0 484,108 - -0.3 484,111 + -0.5 484,169 + -0.8 484,177 - -0.1 484,207 - -0.2 484,243 + -0.5 484,251 - -0.3 484,268 + -0.1 484,275 - -0.6 484,278 + +0.0 484,297 + +0.6 484,517 - DVU0429 0.37 -1.2 484,540 + DVU0429 0.43 -0.6 484,548 - DVU0429 0.45 -0.5 484,554 + DVU0429 0.46 +0.5 484,610 - DVU0429 0.60 -0.2 484,706 - DVU0429 0.84 +0.5 484,706 - DVU0429 0.84 -0.9 484,706 - DVU0429 0.84 -0.8 484,716 - DVU0429 0.87 -1.3 484,850 + -1.3 484,858 - -1.3 484,918 + DVU0430 0.12 +0.3 484,927 - DVU0430 0.13 -0.6 484,944 - DVU0430 0.14 +0.2 484,976 + DVU0430 0.17 -1.3 485,010 + DVU0430 0.21 -1.1 485,019 - DVU0430 0.21 -0.7 485,045 + DVU0430 0.24 -2.0 485,053 - DVU0430 0.25 -1.3 485,079 + DVU0430 0.27 -0.7 485,087 + DVU0430 0.28 -0.6 485,121 - DVU0430 0.31 -0.4 485,266 + DVU0430 0.44 -1.1 485,267 - DVU0430 0.44 -0.8 485,272 - DVU0430 0.45 -0.3 485,280 - DVU0430 0.46 -0.5 485,477 + DVU0430 0.64 -0.3 485,479 + DVU0430 0.64 -0.4 485,479 + DVU0430 0.64 -1.8 485,479 + DVU0430 0.64 -0.8 485,487 - DVU0430 0.65 -0.5 485,559 + DVU0430 0.72 -2.5 485,658 - DVU0430 0.81 -0.4 485,721 + DVU0430 0.87 -0.2 485,744 + DVU0430 0.89 -1.1
Or see this region's nucleotide sequence