Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2822

Experiment: Formate/Acetate-Sulfate (60/30-30 mM) minimal without Molybdate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2820 and DVU2821 overlap by 4 nucleotidesDVU2821 and DVU2822 are separated by 467 nucleotidesDVU2822 and dctM are separated by 209 nucleotides DVU2820: DVU2820 - amidohydrolase family protein (TIGR), at 2,925,744 to 2,926,580 DVU2820 DVU2821: DVU2821 - hypothetical protein (TIGR), at 2,926,577 to 2,926,798 DVU2821 DVU2822: DVU2822 - TRAP dicarboxylate family transporter (TIGR), at 2,927,266 to 2,928,276 DVU2822 DVU2823: dctM - TRAP dicarboxylate transporter family protein (TIGR), at 2,928,486 to 2,930,261 dctM Position (kb) 2927 2928 2929Strain fitness (log2 ratio) -2 -1 0 1at 2926.273 kb on - strand, within DVU2820at 2926.278 kb on + strand, within DVU2820at 2926.295 kb on + strand, within DVU2820at 2926.308 kb on + strand, within DVU2820at 2926.384 kb on + strand, within DVU2820at 2926.404 kb on - strand, within DVU2820at 2926.601 kb on + strand, within DVU2821at 2926.616 kb on - strand, within DVU2821at 2926.698 kb on + strand, within DVU2821at 2926.742 kb on - strand, within DVU2821at 2926.745 kb on - strand, within DVU2821at 2926.865 kb on - strandat 2926.896 kb on + strandat 2926.935 kb on + strandat 2927.190 kb on + strandat 2927.378 kb on + strand, within DVU2822at 2927.386 kb on + strand, within DVU2822at 2927.416 kb on - strand, within DVU2822at 2927.447 kb on + strand, within DVU2822at 2927.485 kb on - strand, within DVU2822at 2927.539 kb on + strand, within DVU2822at 2927.551 kb on + strand, within DVU2822at 2927.588 kb on + strand, within DVU2822at 2927.620 kb on - strand, within DVU2822at 2927.746 kb on + strand, within DVU2822at 2927.783 kb on + strand, within DVU2822at 2927.881 kb on + strand, within DVU2822at 2927.910 kb on + strand, within DVU2822at 2927.911 kb on + strand, within DVU2822at 2927.918 kb on + strand, within DVU2822at 2927.936 kb on + strand, within DVU2822at 2927.944 kb on - strand, within DVU2822at 2927.953 kb on + strand, within DVU2822at 2927.953 kb on + strand, within DVU2822at 2927.982 kb on + strand, within DVU2822at 2927.985 kb on - strand, within DVU2822at 2928.148 kb on + strand, within DVU2822at 2928.167 kb on + strand, within DVU2822at 2928.175 kb on - strand, within DVU2822at 2928.522 kb on + strandat 2928.569 kb on + strandat 2928.600 kb on - strandat 2928.729 kb on - strand, within dctMat 2928.733 kb on - strand, within dctMat 2928.838 kb on + strand, within dctMat 2928.846 kb on - strand, within dctMat 2928.905 kb on - strand, within dctMat 2928.905 kb on - strand, within dctMat 2928.975 kb on - strand, within dctMat 2928.986 kb on + strand, within dctMat 2928.992 kb on + strand, within dctMat 2929.098 kb on + strand, within dctMat 2929.107 kb on + strand, within dctMat 2929.128 kb on + strand, within dctMat 2929.141 kb on - strand, within dctMat 2929.190 kb on + strand, within dctMat 2929.190 kb on + strand, within dctMat 2929.222 kb on + strand, within dctMat 2929.254 kb on + strand, within dctMat 2929.269 kb on + strand, within dctM

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) minimal without Molybdate
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2,926,273 - DVU2820 0.63 -0.7
2,926,278 + DVU2820 0.64 +0.5
2,926,295 + DVU2820 0.66 -0.3
2,926,308 + DVU2820 0.67 +1.0
2,926,384 + DVU2820 0.76 -0.6
2,926,404 - DVU2820 0.79 +0.9
2,926,601 + DVU2821 0.11 -0.7
2,926,616 - DVU2821 0.18 -0.8
2,926,698 + DVU2821 0.55 +0.3
2,926,742 - DVU2821 0.74 -0.3
2,926,745 - DVU2821 0.76 -0.0
2,926,865 - -0.2
2,926,896 + -0.2
2,926,935 + +0.3
2,927,190 + -0.0
2,927,378 + DVU2822 0.11 -1.8
2,927,386 + DVU2822 0.12 -0.2
2,927,416 - DVU2822 0.15 +0.8
2,927,447 + DVU2822 0.18 +0.0
2,927,485 - DVU2822 0.22 +0.1
2,927,539 + DVU2822 0.27 -0.1
2,927,551 + DVU2822 0.28 +0.5
2,927,588 + DVU2822 0.32 -0.1
2,927,620 - DVU2822 0.35 +0.7
2,927,746 + DVU2822 0.47 +0.1
2,927,783 + DVU2822 0.51 +0.1
2,927,881 + DVU2822 0.61 +0.8
2,927,910 + DVU2822 0.64 -0.8
2,927,911 + DVU2822 0.64 +0.0
2,927,918 + DVU2822 0.64 +1.5
2,927,936 + DVU2822 0.66 +0.2
2,927,944 - DVU2822 0.67 -0.0
2,927,953 + DVU2822 0.68 +0.1
2,927,953 + DVU2822 0.68 -0.4
2,927,982 + DVU2822 0.71 +0.5
2,927,985 - DVU2822 0.71 -0.0
2,928,148 + DVU2822 0.87 +0.9
2,928,167 + DVU2822 0.89 -0.0
2,928,175 - DVU2822 0.90 -0.8
2,928,522 + -0.9
2,928,569 + -0.3
2,928,600 - -1.1
2,928,729 - dctM DVU2823 0.14 -0.0
2,928,733 - dctM DVU2823 0.14 +0.6
2,928,838 + dctM DVU2823 0.20 -0.2
2,928,846 - dctM DVU2823 0.20 -0.7
2,928,905 - dctM DVU2823 0.24 +1.1
2,928,905 - dctM DVU2823 0.24 +0.1
2,928,975 - dctM DVU2823 0.28 -0.3
2,928,986 + dctM DVU2823 0.28 -0.2
2,928,992 + dctM DVU2823 0.28 -0.2
2,929,098 + dctM DVU2823 0.34 -0.2
2,929,107 + dctM DVU2823 0.35 -0.8
2,929,128 + dctM DVU2823 0.36 -0.6
2,929,141 - dctM DVU2823 0.37 -0.8
2,929,190 + dctM DVU2823 0.40 -0.2
2,929,190 + dctM DVU2823 0.40 -0.4
2,929,222 + dctM DVU2823 0.41 -0.6
2,929,254 + dctM DVU2823 0.43 +0.1
2,929,269 + dctM DVU2823 0.44 +0.2

Or see this region's nucleotide sequence