Experiment: Formate/Acetate-Sulfate (60/30-30 mM) minimal without Molybdate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2820 and DVU2821 overlap by 4 nucleotides DVU2821 and DVU2822 are separated by 467 nucleotides DVU2822 and dctM are separated by 209 nucleotides
DVU2820: DVU2820 - amidohydrolase family protein (TIGR), at 2,925,744 to 2,926,580
DVU2820
DVU2821: DVU2821 - hypothetical protein (TIGR), at 2,926,577 to 2,926,798
DVU2821
DVU2822: DVU2822 - TRAP dicarboxylate family transporter (TIGR), at 2,927,266 to 2,928,276
DVU2822
DVU2823: dctM - TRAP dicarboxylate transporter family protein (TIGR), at 2,928,486 to 2,930,261
dctM
Position (kb)
2927
2928
2929 Strain fitness (log2 ratio)
-2
-1
0
1 at 2926.273 kb on - strand, within DVU2820 at 2926.278 kb on + strand, within DVU2820 at 2926.295 kb on + strand, within DVU2820 at 2926.308 kb on + strand, within DVU2820 at 2926.384 kb on + strand, within DVU2820 at 2926.404 kb on - strand, within DVU2820 at 2926.601 kb on + strand, within DVU2821 at 2926.616 kb on - strand, within DVU2821 at 2926.698 kb on + strand, within DVU2821 at 2926.742 kb on - strand, within DVU2821 at 2926.745 kb on - strand, within DVU2821 at 2926.865 kb on - strand at 2926.896 kb on + strand at 2926.935 kb on + strand at 2927.190 kb on + strand at 2927.378 kb on + strand, within DVU2822 at 2927.386 kb on + strand, within DVU2822 at 2927.416 kb on - strand, within DVU2822 at 2927.447 kb on + strand, within DVU2822 at 2927.485 kb on - strand, within DVU2822 at 2927.539 kb on + strand, within DVU2822 at 2927.551 kb on + strand, within DVU2822 at 2927.588 kb on + strand, within DVU2822 at 2927.620 kb on - strand, within DVU2822 at 2927.746 kb on + strand, within DVU2822 at 2927.783 kb on + strand, within DVU2822 at 2927.881 kb on + strand, within DVU2822 at 2927.910 kb on + strand, within DVU2822 at 2927.911 kb on + strand, within DVU2822 at 2927.918 kb on + strand, within DVU2822 at 2927.936 kb on + strand, within DVU2822 at 2927.944 kb on - strand, within DVU2822 at 2927.953 kb on + strand, within DVU2822 at 2927.953 kb on + strand, within DVU2822 at 2927.982 kb on + strand, within DVU2822 at 2927.985 kb on - strand, within DVU2822 at 2928.148 kb on + strand, within DVU2822 at 2928.167 kb on + strand, within DVU2822 at 2928.175 kb on - strand, within DVU2822 at 2928.522 kb on + strand at 2928.569 kb on + strand at 2928.600 kb on - strand at 2928.729 kb on - strand, within dctM at 2928.733 kb on - strand, within dctM at 2928.838 kb on + strand, within dctM at 2928.846 kb on - strand, within dctM at 2928.905 kb on - strand, within dctM at 2928.905 kb on - strand, within dctM at 2928.975 kb on - strand, within dctM at 2928.986 kb on + strand, within dctM at 2928.992 kb on + strand, within dctM at 2929.098 kb on + strand, within dctM at 2929.107 kb on + strand, within dctM at 2929.128 kb on + strand, within dctM at 2929.141 kb on - strand, within dctM at 2929.190 kb on + strand, within dctM at 2929.190 kb on + strand, within dctM at 2929.222 kb on + strand, within dctM at 2929.254 kb on + strand, within dctM at 2929.269 kb on + strand, within dctM
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) minimal without Molybdate remove 2,926,273 - DVU2820 0.63 -0.7 2,926,278 + DVU2820 0.64 +0.5 2,926,295 + DVU2820 0.66 -0.3 2,926,308 + DVU2820 0.67 +1.0 2,926,384 + DVU2820 0.76 -0.6 2,926,404 - DVU2820 0.79 +0.9 2,926,601 + DVU2821 0.11 -0.7 2,926,616 - DVU2821 0.18 -0.8 2,926,698 + DVU2821 0.55 +0.3 2,926,742 - DVU2821 0.74 -0.3 2,926,745 - DVU2821 0.76 -0.0 2,926,865 - -0.2 2,926,896 + -0.2 2,926,935 + +0.3 2,927,190 + -0.0 2,927,378 + DVU2822 0.11 -1.8 2,927,386 + DVU2822 0.12 -0.2 2,927,416 - DVU2822 0.15 +0.8 2,927,447 + DVU2822 0.18 +0.0 2,927,485 - DVU2822 0.22 +0.1 2,927,539 + DVU2822 0.27 -0.1 2,927,551 + DVU2822 0.28 +0.5 2,927,588 + DVU2822 0.32 -0.1 2,927,620 - DVU2822 0.35 +0.7 2,927,746 + DVU2822 0.47 +0.1 2,927,783 + DVU2822 0.51 +0.1 2,927,881 + DVU2822 0.61 +0.8 2,927,910 + DVU2822 0.64 -0.8 2,927,911 + DVU2822 0.64 +0.0 2,927,918 + DVU2822 0.64 +1.5 2,927,936 + DVU2822 0.66 +0.2 2,927,944 - DVU2822 0.67 -0.0 2,927,953 + DVU2822 0.68 +0.1 2,927,953 + DVU2822 0.68 -0.4 2,927,982 + DVU2822 0.71 +0.5 2,927,985 - DVU2822 0.71 -0.0 2,928,148 + DVU2822 0.87 +0.9 2,928,167 + DVU2822 0.89 -0.0 2,928,175 - DVU2822 0.90 -0.8 2,928,522 + -0.9 2,928,569 + -0.3 2,928,600 - -1.1 2,928,729 - dctM DVU2823 0.14 -0.0 2,928,733 - dctM DVU2823 0.14 +0.6 2,928,838 + dctM DVU2823 0.20 -0.2 2,928,846 - dctM DVU2823 0.20 -0.7 2,928,905 - dctM DVU2823 0.24 +1.1 2,928,905 - dctM DVU2823 0.24 +0.1 2,928,975 - dctM DVU2823 0.28 -0.3 2,928,986 + dctM DVU2823 0.28 -0.2 2,928,992 + dctM DVU2823 0.28 -0.2 2,929,098 + dctM DVU2823 0.34 -0.2 2,929,107 + dctM DVU2823 0.35 -0.8 2,929,128 + dctM DVU2823 0.36 -0.6 2,929,141 - dctM DVU2823 0.37 -0.8 2,929,190 + dctM DVU2823 0.40 -0.2 2,929,190 + dctM DVU2823 0.40 -0.4 2,929,222 + dctM DVU2823 0.41 -0.6 2,929,254 + dctM DVU2823 0.43 +0.1 2,929,269 + dctM DVU2823 0.44 +0.2
Or see this region's nucleotide sequence