Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2450

Experiment: Formate/Acetate-Sulfate (60/30-30 mM) minimal without Molybdate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmetK and DVU2450 are separated by 170 nucleotidesDVU2450 and DVU2451 are separated by 296 nucleotides DVU2449: metK - S-adenosylmethionine synthetase (TIGR), at 2,553,206 to 2,554,381 metK DVU2450: DVU2450 - conserved hypothetical protein (TIGR), at 2,554,552 to 2,554,758 DVU2450 DVU2451: DVU2451 - L-lactate permease family protein (TIGR), at 2,555,055 to 2,556,767 DVU2451 Position (kb) 2554 2555Strain fitness (log2 ratio) -2 -1 0 1at 2554.548 kb on + strandat 2554.549 kb on - strandat 2554.872 kb on - strandat 2554.877 kb on + strandat 2554.900 kb on + strandat 2555.183 kb on - strandat 2555.223 kb on + strandat 2555.236 kb on + strand, within DVU2451at 2555.376 kb on - strand, within DVU2451at 2555.421 kb on - strand, within DVU2451at 2555.514 kb on + strand, within DVU2451at 2555.645 kb on + strand, within DVU2451at 2555.671 kb on - strand, within DVU2451at 2555.697 kb on + strand, within DVU2451at 2555.725 kb on + strand, within DVU2451

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) minimal without Molybdate
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2,554,548 + -1.9
2,554,549 - +0.1
2,554,872 - -0.2
2,554,877 + -0.2
2,554,900 + -0.3
2,555,183 - -0.2
2,555,223 + -0.2
2,555,236 + DVU2451 0.11 -1.3
2,555,376 - DVU2451 0.19 -0.7
2,555,421 - DVU2451 0.21 -0.4
2,555,514 + DVU2451 0.27 -0.2
2,555,645 + DVU2451 0.34 -0.5
2,555,671 - DVU2451 0.36 -0.3
2,555,697 + DVU2451 0.37 +0.8
2,555,725 + DVU2451 0.39 -0.5

Or see this region's nucleotide sequence