Experiment: Formate/Acetate-Sulfate (60/30-30 mM) minimal without Molybdate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sucCD and DVU2138 are separated by 36 nucleotides DVU2138 and aphA are separated by 52 nucleotides aphA and tmk are separated by 153 nucleotides tmk and DVU2141 overlap by 25 nucleotides
DVU2137: sucCD - succinyl-CoA synthetase, alpha/beta subunit (sucCD) (Chris Hemme), at 2,233,371 to 2,235,500
sucCD
DVU2138: DVU2138 - conserved hypothetical protein (TIGR), at 2,235,537 to 2,236,190
DVU2138
DVU2139: aphA - histone deacetylase family protein (TIGR), at 2,236,243 to 2,237,562
aphA
DVU2140: tmk - thymidylate kinase (TIGR), at 2,237,716 to 2,238,390
tmk
DVU2141: DVU2141 - nucleic acid-binding protein, putative (TIGR), at 2,238,366 to 2,239,403
DVU2141
Position (kb)
2236
2237
2238 Strain fitness (log2 ratio)
-2
-1
0
1 at 2235.538 kb on + strand at 2235.702 kb on - strand, within DVU2138 at 2235.724 kb on - strand, within DVU2138 at 2235.754 kb on + strand, within DVU2138 at 2235.941 kb on + strand, within DVU2138 at 2235.993 kb on - strand, within DVU2138 at 2236.043 kb on + strand, within DVU2138 at 2236.170 kb on - strand at 2236.170 kb on - strand at 2236.171 kb on + strand at 2236.206 kb on + strand at 2236.214 kb on - strand at 2236.422 kb on - strand, within aphA at 2236.452 kb on + strand, within aphA at 2236.474 kb on - strand, within aphA at 2236.540 kb on + strand, within aphA at 2236.545 kb on + strand, within aphA at 2236.616 kb on - strand, within aphA at 2236.619 kb on + strand, within aphA at 2236.627 kb on - strand, within aphA at 2236.645 kb on + strand, within aphA at 2236.742 kb on + strand, within aphA at 2236.786 kb on - strand, within aphA at 2236.851 kb on - strand, within aphA at 2237.017 kb on + strand, within aphA at 2237.023 kb on - strand, within aphA at 2237.033 kb on - strand, within aphA at 2237.056 kb on - strand, within aphA at 2237.148 kb on - strand, within aphA at 2237.148 kb on - strand, within aphA at 2237.265 kb on - strand, within aphA at 2237.678 kb on + strand at 2238.400 kb on - strand at 2238.545 kb on - strand, within DVU2141
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) minimal without Molybdate remove 2,235,538 + -1.2 2,235,702 - DVU2138 0.25 -0.7 2,235,724 - DVU2138 0.29 -0.5 2,235,754 + DVU2138 0.33 +0.7 2,235,941 + DVU2138 0.62 -0.4 2,235,993 - DVU2138 0.70 +0.5 2,236,043 + DVU2138 0.77 -0.4 2,236,170 - -0.8 2,236,170 - -0.0 2,236,171 + -1.7 2,236,206 + -0.5 2,236,214 - +0.5 2,236,422 - aphA DVU2139 0.14 -1.7 2,236,452 + aphA DVU2139 0.16 -1.9 2,236,474 - aphA DVU2139 0.17 -1.4 2,236,540 + aphA DVU2139 0.23 -1.0 2,236,545 + aphA DVU2139 0.23 -1.5 2,236,616 - aphA DVU2139 0.28 -1.3 2,236,619 + aphA DVU2139 0.28 -1.4 2,236,627 - aphA DVU2139 0.29 -1.0 2,236,645 + aphA DVU2139 0.30 -0.7 2,236,742 + aphA DVU2139 0.38 -0.9 2,236,786 - aphA DVU2139 0.41 -0.9 2,236,851 - aphA DVU2139 0.46 -1.7 2,237,017 + aphA DVU2139 0.59 -1.3 2,237,023 - aphA DVU2139 0.59 -0.6 2,237,033 - aphA DVU2139 0.60 -1.5 2,237,056 - aphA DVU2139 0.62 -0.1 2,237,148 - aphA DVU2139 0.69 -0.1 2,237,148 - aphA DVU2139 0.69 -1.0 2,237,265 - aphA DVU2139 0.77 -0.8 2,237,678 + -0.5 2,238,400 - -0.3 2,238,545 - DVU2141 0.17 -1.4
Or see this region's nucleotide sequence