Experiment: Formate/Acetate-Sulfate (60/30-30 mM) minimal without Molybdate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt metK and DVU2450 are separated by 170 nucleotides DVU2450 and DVU2451 are separated by 296 nucleotides DVU2451 and DVU2454 are separated by 703 nucleotides
DVU2449: metK - S-adenosylmethionine synthetase (TIGR), at 2,553,206 to 2,554,381
metK
DVU2450: DVU2450 - conserved hypothetical protein (TIGR), at 2,554,552 to 2,554,758
DVU2450
DVU2451: DVU2451 - L-lactate permease family protein (TIGR), at 2,555,055 to 2,556,767
DVU2451
DVU2454: DVU2454 - hypothetical protein (TIGR), at 2,557,471 to 2,557,740
DVU2454
Position (kb)
2555
2556
2557 Strain fitness (log2 ratio)
-1
0
1 at 2554.548 kb on + strand at 2554.549 kb on - strand at 2554.872 kb on - strand at 2554.877 kb on + strand at 2554.900 kb on + strand at 2555.183 kb on - strand at 2555.223 kb on + strand at 2555.236 kb on + strand, within DVU2451 at 2555.376 kb on - strand, within DVU2451 at 2555.421 kb on - strand, within DVU2451 at 2555.514 kb on + strand, within DVU2451 at 2555.645 kb on + strand, within DVU2451 at 2555.671 kb on - strand, within DVU2451 at 2555.697 kb on + strand, within DVU2451 at 2555.725 kb on + strand, within DVU2451 at 2555.767 kb on + strand, within DVU2451 at 2555.869 kb on + strand, within DVU2451 at 2556.039 kb on - strand, within DVU2451 at 2556.064 kb on - strand, within DVU2451 at 2556.113 kb on + strand, within DVU2451 at 2556.285 kb on - strand, within DVU2451 at 2556.332 kb on - strand, within DVU2451 at 2556.347 kb on + strand, within DVU2451 at 2556.355 kb on - strand, within DVU2451 at 2556.489 kb on + strand, within DVU2451 at 2556.489 kb on + strand, within DVU2451 at 2556.499 kb on - strand, within DVU2451 at 2556.507 kb on - strand, within DVU2451 at 2556.533 kb on - strand, within DVU2451 at 2556.796 kb on - strand at 2556.807 kb on + strand at 2556.847 kb on - strand at 2557.274 kb on - strand at 2557.308 kb on + strand at 2557.353 kb on + strand at 2557.361 kb on - strand at 2557.361 kb on - strand at 2557.371 kb on - strand at 2557.539 kb on - strand, within DVU2454 at 2557.714 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) minimal without Molybdate remove 2,554,548 + -0.3 2,554,549 - +0.2 2,554,872 - -0.0 2,554,877 + -0.4 2,554,900 + -0.1 2,555,183 - -0.5 2,555,223 + +0.0 2,555,236 + DVU2451 0.11 -0.5 2,555,376 - DVU2451 0.19 -0.7 2,555,421 - DVU2451 0.21 -0.9 2,555,514 + DVU2451 0.27 -0.9 2,555,645 + DVU2451 0.34 -1.1 2,555,671 - DVU2451 0.36 -0.3 2,555,697 + DVU2451 0.37 +0.1 2,555,725 + DVU2451 0.39 -0.8 2,555,767 + DVU2451 0.42 -0.0 2,555,869 + DVU2451 0.48 +0.2 2,556,039 - DVU2451 0.57 -0.8 2,556,064 - DVU2451 0.59 -0.2 2,556,113 + DVU2451 0.62 -0.6 2,556,285 - DVU2451 0.72 -0.6 2,556,332 - DVU2451 0.75 -1.1 2,556,347 + DVU2451 0.75 -0.4 2,556,355 - DVU2451 0.76 -0.7 2,556,489 + DVU2451 0.84 -0.3 2,556,489 + DVU2451 0.84 -0.4 2,556,499 - DVU2451 0.84 +0.1 2,556,507 - DVU2451 0.85 -0.8 2,556,533 - DVU2451 0.86 -0.4 2,556,796 - -0.4 2,556,807 + +0.4 2,556,847 - +0.3 2,557,274 - -0.4 2,557,308 + -0.9 2,557,353 + -0.9 2,557,361 - +0.1 2,557,361 - +0.3 2,557,371 - -0.3 2,557,539 - DVU2454 0.25 -0.4 2,557,714 + -0.9
Or see this region's nucleotide sequence