Experiment: Formate/Acetate-Sulfate (60/30-30 mM) minimal without Molybdate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0667 and DVU0668 are separated by 169 nucleotides DVU0668 and DVU0669 are separated by 165 nucleotides DVU0669 and DVU0670 are separated by 20 nucleotides
DVU0667: DVU0667 - HD domain protein (TIGR), at 738,684 to 739,673
DVU0667
DVU0668: DVU0668 - methyl-accepting chemotaxis protein (TIGR), at 739,843 to 741,429
DVU0668
DVU0669: DVU0669 - hypothetical protein (TIGR), at 741,595 to 742,365
DVU0669
DVU0670: DVU0670 - exopolysaccharide production protein, putative (TIGR), at 742,386 to 743,657
DVU0670
Position (kb) 739
740
741
742 Strain fitness (log2 ratio) -1
0
1
2 at 738.858 kb on - strand, within DVU0667 at 738.883 kb on + strand, within DVU0667 at 738.883 kb on + strand, within DVU0667 at 738.894 kb on + strand, within DVU0667 at 738.950 kb on + strand, within DVU0667 at 738.958 kb on - strand, within DVU0667 at 738.960 kb on + strand, within DVU0667 at 738.968 kb on - strand, within DVU0667 at 739.011 kb on + strand, within DVU0667 at 739.035 kb on + strand, within DVU0667 at 739.092 kb on - strand, within DVU0667 at 739.123 kb on - strand, within DVU0667 at 739.191 kb on - strand, within DVU0667 at 739.198 kb on - strand, within DVU0667 at 739.222 kb on + strand, within DVU0667 at 739.248 kb on + strand, within DVU0667 at 739.387 kb on + strand, within DVU0667 at 739.387 kb on + strand, within DVU0667 at 739.465 kb on - strand, within DVU0667 at 739.535 kb on - strand, within DVU0667 at 739.545 kb on - strand, within DVU0667 at 739.603 kb on - strand at 739.605 kb on + strand at 739.636 kb on - strand at 739.683 kb on - strand at 739.719 kb on + strand at 739.746 kb on + strand at 739.914 kb on - strand at 739.935 kb on + strand at 739.950 kb on + strand at 739.950 kb on + strand at 739.957 kb on - strand at 740.059 kb on - strand, within DVU0668 at 740.065 kb on + strand, within DVU0668 at 740.106 kb on + strand, within DVU0668 at 740.106 kb on + strand, within DVU0668 at 740.127 kb on + strand, within DVU0668 at 740.128 kb on + strand, within DVU0668 at 740.135 kb on - strand, within DVU0668 at 740.217 kb on - strand, within DVU0668 at 740.281 kb on + strand, within DVU0668 at 740.319 kb on + strand, within DVU0668 at 740.384 kb on + strand, within DVU0668 at 740.397 kb on + strand, within DVU0668 at 740.397 kb on + strand, within DVU0668 at 740.507 kb on - strand, within DVU0668 at 740.701 kb on - strand, within DVU0668 at 740.714 kb on + strand, within DVU0668 at 740.740 kb on - strand, within DVU0668 at 740.803 kb on - strand, within DVU0668 at 740.858 kb on - strand, within DVU0668 at 740.932 kb on - strand, within DVU0668 at 740.996 kb on + strand, within DVU0668 at 741.084 kb on + strand, within DVU0668 at 741.092 kb on - strand, within DVU0668 at 741.132 kb on + strand, within DVU0668 at 741.153 kb on - strand, within DVU0668 at 741.236 kb on + strand, within DVU0668 at 741.240 kb on + strand, within DVU0668 at 741.244 kb on - strand, within DVU0668 at 741.246 kb on + strand, within DVU0668 at 741.246 kb on + strand, within DVU0668 at 741.273 kb on + strand at 741.289 kb on + strand at 741.375 kb on - strand at 741.375 kb on - strand at 741.382 kb on - strand at 741.397 kb on + strand at 741.397 kb on + strand at 741.416 kb on + strand at 741.482 kb on - strand at 741.519 kb on - strand at 741.562 kb on - strand at 741.607 kb on - strand at 741.610 kb on - strand at 741.775 kb on + strand, within DVU0669 at 741.815 kb on - strand, within DVU0669 at 741.878 kb on + strand, within DVU0669 at 741.932 kb on - strand, within DVU0669 at 741.984 kb on + strand, within DVU0669 at 742.143 kb on - strand, within DVU0669 at 742.156 kb on + strand, within DVU0669 at 742.180 kb on - strand, within DVU0669
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) minimal without Molybdate remove 738,858 - DVU0667 0.18 +0.2 738,883 + DVU0667 0.20 +0.4 738,883 + DVU0667 0.20 +0.3 738,894 + DVU0667 0.21 +1.1 738,950 + DVU0667 0.27 +0.1 738,958 - DVU0667 0.28 +0.1 738,960 + DVU0667 0.28 +0.1 738,968 - DVU0667 0.29 +0.7 739,011 + DVU0667 0.33 -0.0 739,035 + DVU0667 0.35 -0.3 739,092 - DVU0667 0.41 -0.3 739,123 - DVU0667 0.44 +0.2 739,191 - DVU0667 0.51 -0.3 739,198 - DVU0667 0.52 +0.2 739,222 + DVU0667 0.54 -0.0 739,248 + DVU0667 0.57 -1.0 739,387 + DVU0667 0.71 -0.0 739,387 + DVU0667 0.71 -0.3 739,465 - DVU0667 0.79 -0.1 739,535 - DVU0667 0.86 +0.5 739,545 - DVU0667 0.87 +1.0 739,603 - +0.5 739,605 + -0.8 739,636 - -1.3 739,683 - -0.8 739,719 + -0.1 739,746 + -0.3 739,914 - -0.3 739,935 + +0.5 739,950 + -0.1 739,950 + -0.2 739,957 - -0.0 740,059 - DVU0668 0.14 +0.0 740,065 + DVU0668 0.14 -1.0 740,106 + DVU0668 0.17 +0.1 740,106 + DVU0668 0.17 +2.2 740,127 + DVU0668 0.18 -1.3 740,128 + DVU0668 0.18 -0.1 740,135 - DVU0668 0.18 -0.3 740,217 - DVU0668 0.24 -0.2 740,281 + DVU0668 0.28 -1.1 740,319 + DVU0668 0.30 -1.0 740,384 + DVU0668 0.34 -0.3 740,397 + DVU0668 0.35 -0.3 740,397 + DVU0668 0.35 +0.5 740,507 - DVU0668 0.42 -0.4 740,701 - DVU0668 0.54 -0.6 740,714 + DVU0668 0.55 -0.1 740,740 - DVU0668 0.57 -0.6 740,803 - DVU0668 0.60 +0.2 740,858 - DVU0668 0.64 -1.6 740,932 - DVU0668 0.69 -0.6 740,996 + DVU0668 0.73 -0.5 741,084 + DVU0668 0.78 -0.7 741,092 - DVU0668 0.79 -0.4 741,132 + DVU0668 0.81 -0.2 741,153 - DVU0668 0.83 -1.4 741,236 + DVU0668 0.88 -0.4 741,240 + DVU0668 0.88 -0.9 741,244 - DVU0668 0.88 -1.4 741,246 + DVU0668 0.88 -0.1 741,246 + DVU0668 0.88 -1.5 741,273 + -0.8 741,289 + +0.5 741,375 - -1.7 741,375 - -1.1 741,382 - -1.1 741,397 + +0.3 741,397 + -1.1 741,416 + +0.1 741,482 - -0.0 741,519 - -0.1 741,562 - +0.1 741,607 - -0.5 741,610 - -0.8 741,775 + DVU0669 0.23 -0.8 741,815 - DVU0669 0.29 +0.0 741,878 + DVU0669 0.37 -0.7 741,932 - DVU0669 0.44 -1.5 741,984 + DVU0669 0.50 -1.3 742,143 - DVU0669 0.71 -0.2 742,156 + DVU0669 0.73 -0.3 742,180 - DVU0669 0.76 -0.1
Or see this region's nucleotide sequence