Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2983
Experiment: Formate/Acetate-Sulfate (60/30-30 mM) minimal without W
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfate (60/30-30 mM) minimal without W |
---|---|---|---|---|---|
remove | |||||
3,089,652 | + | leuC | DVU2982 | 0.22 | -2.4 |
3,089,653 | - | leuC | DVU2982 | 0.22 | -0.9 |
3,089,694 | - | leuC | DVU2982 | 0.26 | -1.1 |
3,089,763 | + | leuC | DVU2982 | 0.31 | -2.0 |
3,089,783 | + | leuC | DVU2982 | 0.33 | -3.5 |
3,089,783 | + | leuC | DVU2982 | 0.33 | -3.9 |
3,089,818 | - | leuC | DVU2982 | 0.35 | -1.1 |
3,089,833 | + | leuC | DVU2982 | 0.37 | -2.5 |
3,089,841 | - | leuC | DVU2982 | 0.37 | -4.3 |
3,089,925 | - | leuC | DVU2982 | 0.44 | -0.7 |
3,089,942 | + | leuC | DVU2982 | 0.45 | -3.0 |
3,089,942 | + | leuC | DVU2982 | 0.45 | -5.2 |
3,089,947 | + | leuC | DVU2982 | 0.46 | -3.9 |
3,089,950 | - | leuC | DVU2982 | 0.46 | -1.1 |
3,090,076 | + | leuC | DVU2982 | 0.56 | -2.5 |
3,090,115 | + | leuC | DVU2982 | 0.59 | -2.4 |
3,090,137 | + | leuC | DVU2982 | 0.61 | -3.0 |
3,090,145 | - | leuC | DVU2982 | 0.61 | -3.1 |
3,090,164 | - | leuC | DVU2982 | 0.63 | -3.4 |
3,090,178 | - | leuC | DVU2982 | 0.64 | -0.8 |
3,090,348 | + | leuC | DVU2982 | 0.77 | -2.5 |
3,090,412 | - | leuC | DVU2982 | 0.83 | -4.6 |
3,090,565 | + | -0.7 | |||
3,090,616 | + | -0.2 | |||
3,090,618 | + | -1.9 | |||
3,090,624 | - | +0.3 | |||
3,090,766 | - | leuD | DVU2983 | 0.23 | -3.2 |
3,090,777 | + | leuD | DVU2983 | 0.25 | -4.2 |
3,090,787 | - | leuD | DVU2983 | 0.27 | -2.8 |
3,090,939 | - | leuD | DVU2983 | 0.58 | -3.4 |
3,091,059 | - | leuD | DVU2983 | 0.81 | -2.0 |
3,091,066 | + | leuD | DVU2983 | 0.83 | -2.9 |
3,091,074 | - | leuD | DVU2983 | 0.84 | -2.4 |
3,091,114 | + | -1.5 | |||
3,091,269 | - | DVU2984 | 0.11 | -2.2 | |
3,091,291 | - | DVU2984 | 0.13 | -1.2 | |
3,091,355 | + | DVU2984 | 0.20 | -1.0 | |
3,091,402 | - | DVU2984 | 0.25 | -0.7 | |
3,091,464 | + | DVU2984 | 0.31 | +0.3 | |
3,091,472 | - | DVU2984 | 0.31 | -0.7 | |
3,091,504 | + | DVU2984 | 0.35 | +0.6 | |
3,091,569 | + | DVU2984 | 0.41 | +0.3 | |
3,091,709 | - | DVU2984 | 0.55 | -0.3 | |
3,091,716 | - | DVU2984 | 0.56 | -1.6 | |
3,091,828 | - | DVU2984 | 0.67 | -1.2 | |
3,091,870 | + | DVU2984 | 0.71 | -1.2 | |
3,091,878 | + | DVU2984 | 0.72 | -0.9 | |
3,091,918 | + | DVU2984 | 0.76 | -0.2 | |
3,091,923 | + | DVU2984 | 0.76 | -0.3 | |
3,091,931 | - | DVU2984 | 0.77 | +0.5 | |
3,091,968 | + | DVU2984 | 0.81 | +0.3 | |
3,092,003 | + | DVU2984 | 0.84 | -0.8 | |
3,092,027 | + | DVU2984 | 0.87 | -0.2 | |
3,092,034 | + | DVU2984 | 0.87 | -0.1 |
Or see this region's nucleotide sequence