Experiment: Formate/Acetate-Sulfate (60/30-30 mM) minimal without W
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2954 and flrA are separated by 419 nucleotides flrA and DVU2957 are separated by 109 nucleotides DVU2957 and DVU2958 overlap by 4 nucleotides
DVU2954: DVU2954 - GGDEF domain protein (TIGR), at 3,062,063 to 3,063,742
DVU2954
DVU2956: flrA - sigma-54 dependent transcriptional regulator (TIGR), at 3,064,162 to 3,065,199
flrA
DVU2957: DVU2957 - hypothetical protein (TIGR), at 3,065,309 to 3,065,449
DVU2957
DVU2958: DVU2958 - membrane protein, putative (TIGR), at 3,065,446 to 3,066,444
DVU2958
Position (kb)
3064
3065
3066 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3063.184 kb on - strand, within DVU2954 at 3063.239 kb on + strand, within DVU2954 at 3063.269 kb on + strand, within DVU2954 at 3063.342 kb on + strand, within DVU2954 at 3063.373 kb on + strand, within DVU2954 at 3063.432 kb on + strand, within DVU2954 at 3063.442 kb on - strand, within DVU2954 at 3063.442 kb on - strand, within DVU2954 at 3063.587 kb on - strand at 3063.620 kb on + strand at 3063.628 kb on - strand at 3063.652 kb on - strand at 3063.665 kb on + strand at 3063.665 kb on + strand at 3063.685 kb on + strand at 3063.693 kb on - strand at 3063.714 kb on + strand at 3063.714 kb on + strand at 3063.714 kb on + strand at 3063.714 kb on + strand at 3063.722 kb on - strand at 3063.722 kb on - strand at 3063.722 kb on - strand at 3063.722 kb on - strand at 3063.722 kb on - strand at 3063.745 kb on - strand at 3063.985 kb on + strand at 3063.985 kb on + strand at 3063.987 kb on + strand at 3064.011 kb on + strand at 3064.019 kb on - strand at 3064.200 kb on + strand at 3064.209 kb on + strand at 3064.209 kb on + strand at 3064.265 kb on + strand at 3064.715 kb on + strand, within flrA at 3064.779 kb on + strand, within flrA at 3064.907 kb on + strand, within flrA at 3064.921 kb on + strand, within flrA at 3065.029 kb on - strand, within flrA at 3065.289 kb on + strand at 3065.332 kb on - strand, within DVU2957 at 3065.494 kb on + strand at 3065.502 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) minimal without W remove 3,063,184 - DVU2954 0.67 +0.0 3,063,239 + DVU2954 0.70 +0.1 3,063,269 + DVU2954 0.72 -0.2 3,063,342 + DVU2954 0.76 +2.5 3,063,373 + DVU2954 0.78 +0.3 3,063,432 + DVU2954 0.81 -0.2 3,063,442 - DVU2954 0.82 -0.1 3,063,442 - DVU2954 0.82 +0.4 3,063,587 - -0.0 3,063,620 + -0.2 3,063,628 - +0.2 3,063,652 - -0.4 3,063,665 + +0.4 3,063,665 + -0.5 3,063,685 + +0.1 3,063,693 - +0.5 3,063,714 + +0.0 3,063,714 + +0.1 3,063,714 + +0.3 3,063,714 + +0.0 3,063,722 - -0.7 3,063,722 - -0.1 3,063,722 - +0.9 3,063,722 - -0.6 3,063,722 - +0.2 3,063,745 - -0.1 3,063,985 + -1.5 3,063,985 + -0.2 3,063,987 + +0.1 3,064,011 + -0.0 3,064,019 - -0.2 3,064,200 + -0.6 3,064,209 + -0.7 3,064,209 + +0.2 3,064,265 + -1.2 3,064,715 + flrA DVU2956 0.53 +0.1 3,064,779 + flrA DVU2956 0.59 -1.7 3,064,907 + flrA DVU2956 0.72 -2.4 3,064,921 + flrA DVU2956 0.73 -0.7 3,065,029 - flrA DVU2956 0.84 -0.5 3,065,289 + -0.2 3,065,332 - DVU2957 0.16 -0.6 3,065,494 + -0.5 3,065,502 - -0.7
Or see this region's nucleotide sequence