Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2956

Experiment: Formate/Acetate-Sulfate (60/30-30 mM) minimal without W

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2954 and flrA are separated by 419 nucleotidesflrA and DVU2957 are separated by 109 nucleotidesDVU2957 and DVU2958 overlap by 4 nucleotides DVU2954: DVU2954 - GGDEF domain protein (TIGR), at 3,062,063 to 3,063,742 DVU2954 DVU2956: flrA - sigma-54 dependent transcriptional regulator (TIGR), at 3,064,162 to 3,065,199 flrA DVU2957: DVU2957 - hypothetical protein (TIGR), at 3,065,309 to 3,065,449 DVU2957 DVU2958: DVU2958 - membrane protein, putative (TIGR), at 3,065,446 to 3,066,444 DVU2958 Position (kb) 3064 3065 3066Strain fitness (log2 ratio) -2 -1 0 1 2at 3063.184 kb on - strand, within DVU2954at 3063.239 kb on + strand, within DVU2954at 3063.269 kb on + strand, within DVU2954at 3063.342 kb on + strand, within DVU2954at 3063.373 kb on + strand, within DVU2954at 3063.432 kb on + strand, within DVU2954at 3063.442 kb on - strand, within DVU2954at 3063.442 kb on - strand, within DVU2954at 3063.587 kb on - strandat 3063.620 kb on + strandat 3063.628 kb on - strandat 3063.652 kb on - strandat 3063.665 kb on + strandat 3063.665 kb on + strandat 3063.685 kb on + strandat 3063.693 kb on - strandat 3063.714 kb on + strandat 3063.714 kb on + strandat 3063.714 kb on + strandat 3063.714 kb on + strandat 3063.722 kb on - strandat 3063.722 kb on - strandat 3063.722 kb on - strandat 3063.722 kb on - strandat 3063.722 kb on - strandat 3063.745 kb on - strandat 3063.985 kb on + strandat 3063.985 kb on + strandat 3063.987 kb on + strandat 3064.011 kb on + strandat 3064.019 kb on - strandat 3064.200 kb on + strandat 3064.209 kb on + strandat 3064.209 kb on + strandat 3064.265 kb on + strandat 3064.715 kb on + strand, within flrAat 3064.779 kb on + strand, within flrAat 3064.907 kb on + strand, within flrAat 3064.921 kb on + strand, within flrAat 3065.029 kb on - strand, within flrAat 3065.289 kb on + strandat 3065.332 kb on - strand, within DVU2957at 3065.494 kb on + strandat 3065.502 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) minimal without W
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3,063,184 - DVU2954 0.67 +0.0
3,063,239 + DVU2954 0.70 +0.1
3,063,269 + DVU2954 0.72 -0.2
3,063,342 + DVU2954 0.76 +2.5
3,063,373 + DVU2954 0.78 +0.3
3,063,432 + DVU2954 0.81 -0.2
3,063,442 - DVU2954 0.82 -0.1
3,063,442 - DVU2954 0.82 +0.4
3,063,587 - -0.0
3,063,620 + -0.2
3,063,628 - +0.2
3,063,652 - -0.4
3,063,665 + +0.4
3,063,665 + -0.5
3,063,685 + +0.1
3,063,693 - +0.5
3,063,714 + +0.0
3,063,714 + +0.1
3,063,714 + +0.3
3,063,714 + +0.0
3,063,722 - -0.7
3,063,722 - -0.1
3,063,722 - +0.9
3,063,722 - -0.6
3,063,722 - +0.2
3,063,745 - -0.1
3,063,985 + -1.5
3,063,985 + -0.2
3,063,987 + +0.1
3,064,011 + -0.0
3,064,019 - -0.2
3,064,200 + -0.6
3,064,209 + -0.7
3,064,209 + +0.2
3,064,265 + -1.2
3,064,715 + flrA DVU2956 0.53 +0.1
3,064,779 + flrA DVU2956 0.59 -1.7
3,064,907 + flrA DVU2956 0.72 -2.4
3,064,921 + flrA DVU2956 0.73 -0.7
3,065,029 - flrA DVU2956 0.84 -0.5
3,065,289 + -0.2
3,065,332 - DVU2957 0.16 -0.6
3,065,494 + -0.5
3,065,502 - -0.7

Or see this region's nucleotide sequence