Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0969

Experiment: Formate/Acetate-Sulfate (60/30-30 mM) minimal without Molybdate/Tungstate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU0967 and DVU0968 overlap by 4 nucleotidesDVU0968 and DVU0969 are separated by 247 nucleotidesDVU0969 and DVU0970 are separated by 2 nucleotidesDVU0970 and DVU0971 overlap by 1 nucleotides DVU0967: DVU0967 - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR), at 1,064,266 to 1,065,279 DVU0967 DVU0968: DVU0968 - amino acid ABC transporter, ATP-binding protein (TIGR), at 1,065,276 to 1,066,016 DVU0968 DVU0969: DVU0969 - efflux protein, LysE family (TIGR), at 1,066,264 to 1,067,010 DVU0969 DVU0970: DVU0970 - lipoprotein, putative (TIGR), at 1,067,013 to 1,067,552 DVU0970 DVU0971: DVU0971 - molybdenum cofactor biosynthesis protein (TIGR), at 1,067,552 to 1,068,331 DVU0971 Position (kb) 1066 1067 1068Strain fitness (log2 ratio) -2 -1 0 1 2at 1065.420 kb on - strand, within DVU0968at 1065.436 kb on + strand, within DVU0968at 1065.491 kb on + strand, within DVU0968at 1065.554 kb on + strand, within DVU0968at 1065.698 kb on + strand, within DVU0968at 1065.706 kb on - strand, within DVU0968at 1065.760 kb on - strand, within DVU0968at 1065.760 kb on - strand, within DVU0968at 1065.760 kb on - strand, within DVU0968at 1065.872 kb on + strand, within DVU0968at 1065.911 kb on - strand, within DVU0968at 1065.928 kb on - strand, within DVU0968at 1065.957 kb on - strandat 1065.983 kb on - strandat 1066.040 kb on - strandat 1066.143 kb on - strandat 1066.258 kb on - strandat 1066.311 kb on - strandat 1066.342 kb on - strand, within DVU0969at 1066.387 kb on + strand, within DVU0969at 1066.387 kb on + strand, within DVU0969at 1066.387 kb on + strand, within DVU0969at 1066.387 kb on + strand, within DVU0969at 1066.387 kb on + strand, within DVU0969at 1066.387 kb on + strand, within DVU0969at 1066.395 kb on - strand, within DVU0969at 1066.395 kb on - strand, within DVU0969at 1066.405 kb on - strand, within DVU0969at 1066.427 kb on + strand, within DVU0969at 1066.506 kb on - strand, within DVU0969at 1066.679 kb on - strand, within DVU0969at 1066.845 kb on + strand, within DVU0969at 1066.853 kb on - strand, within DVU0969at 1066.881 kb on + strand, within DVU0969at 1066.912 kb on + strand, within DVU0969at 1066.920 kb on - strand, within DVU0969at 1066.930 kb on - strand, within DVU0969at 1067.089 kb on - strand, within DVU0970at 1067.179 kb on + strand, within DVU0970at 1067.287 kb on + strand, within DVU0970at 1067.474 kb on + strand, within DVU0970at 1067.482 kb on - strand, within DVU0970at 1067.496 kb on + strand, within DVU0970at 1067.504 kb on - strandat 1067.597 kb on + strandat 1067.760 kb on + strand, within DVU0971at 1067.828 kb on - strand, within DVU0971at 1067.829 kb on + strand, within DVU0971at 1067.908 kb on + strand, within DVU0971at 1067.931 kb on + strand, within DVU0971at 1067.966 kb on - strand, within DVU0971at 1067.981 kb on + strand, within DVU0971at 1067.981 kb on + strand, within DVU0971at 1068.005 kb on + strand, within DVU0971

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) minimal without Molybdate/Tungstate
remove
1,065,420 - DVU0968 0.19 +0.6
1,065,436 + DVU0968 0.22 -1.6
1,065,491 + DVU0968 0.29 +0.2
1,065,554 + DVU0968 0.38 +0.1
1,065,698 + DVU0968 0.57 -0.0
1,065,706 - DVU0968 0.58 +0.2
1,065,760 - DVU0968 0.65 -0.1
1,065,760 - DVU0968 0.65 +0.2
1,065,760 - DVU0968 0.65 -1.0
1,065,872 + DVU0968 0.80 -0.4
1,065,911 - DVU0968 0.86 +0.2
1,065,928 - DVU0968 0.88 -1.4
1,065,957 - +0.2
1,065,983 - -0.0
1,066,040 - +0.1
1,066,143 - -0.3
1,066,258 - -0.4
1,066,311 - -0.2
1,066,342 - DVU0969 0.10 -1.0
1,066,387 + DVU0969 0.16 +0.1
1,066,387 + DVU0969 0.16 -0.2
1,066,387 + DVU0969 0.16 -0.1
1,066,387 + DVU0969 0.16 -0.1
1,066,387 + DVU0969 0.16 +0.0
1,066,387 + DVU0969 0.16 -0.4
1,066,395 - DVU0969 0.18 -0.5
1,066,395 - DVU0969 0.18 -0.8
1,066,405 - DVU0969 0.19 -0.2
1,066,427 + DVU0969 0.22 -0.1
1,066,506 - DVU0969 0.32 -0.0
1,066,679 - DVU0969 0.56 -2.2
1,066,845 + DVU0969 0.78 -0.0
1,066,853 - DVU0969 0.79 +0.3
1,066,881 + DVU0969 0.83 -0.2
1,066,912 + DVU0969 0.87 -0.5
1,066,920 - DVU0969 0.88 +0.7
1,066,930 - DVU0969 0.89 +0.1
1,067,089 - DVU0970 0.14 +0.9
1,067,179 + DVU0970 0.31 -1.1
1,067,287 + DVU0970 0.51 -0.4
1,067,474 + DVU0970 0.85 +0.2
1,067,482 - DVU0970 0.87 +0.1
1,067,496 + DVU0970 0.89 -0.3
1,067,504 - -0.7
1,067,597 + -0.3
1,067,760 + DVU0971 0.27 -1.3
1,067,828 - DVU0971 0.35 -0.5
1,067,829 + DVU0971 0.36 -0.6
1,067,908 + DVU0971 0.46 -0.6
1,067,931 + DVU0971 0.49 -0.2
1,067,966 - DVU0971 0.53 -0.0
1,067,981 + DVU0971 0.55 -0.6
1,067,981 + DVU0971 0.55 +2.0
1,068,005 + DVU0971 0.58 -1.0

Or see this region's nucleotide sequence