Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0444

Experiment: Pyruvate (60mM) with Na2S as sulfur source + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0442 and DVU0443 are separated by 212 nucleotidesDVU0443 and DVU0444 are separated by 7 nucleotidesDVU0444 and DVU0445 are separated by 8 nucleotides DVU0442: DVU0442 - phoH-related protein (TIGR), at 499,787 to 500,983 DVU0442 DVU0443: DVU0443 - exonuclease, putative (Keith Keller), at 501,196 to 501,930 DVU0443 DVU0444: DVU0444 - CBS domain protein (TIGR), at 501,938 to 504,160 DVU0444 DVU0445: DVU0445 - CBS domain protein (TIGR), at 504,169 to 505,893 DVU0445 Position (kb) 501 502 503 504 505Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 500.947 kb on + strandat 501.075 kb on - strandat 501.090 kb on + strandat 501.210 kb on - strandat 501.218 kb on + strandat 501.242 kb on - strandat 501.258 kb on - strandat 501.386 kb on + strand, within DVU0443at 501.394 kb on - strand, within DVU0443at 501.394 kb on - strand, within DVU0443at 501.454 kb on - strand, within DVU0443at 501.474 kb on - strand, within DVU0443at 501.476 kb on - strand, within DVU0443at 501.598 kb on + strand, within DVU0443at 501.774 kb on + strand, within DVU0443at 501.797 kb on - strand, within DVU0443at 501.855 kb on + strand, within DVU0443at 501.863 kb on - strandat 501.925 kb on + strandat 501.945 kb on + strandat 501.953 kb on + strandat 501.953 kb on + strandat 501.960 kb on - strandat 501.966 kb on - strandat 502.002 kb on + strandat 502.002 kb on + strandat 502.049 kb on - strandat 502.054 kb on - strandat 502.059 kb on + strandat 502.081 kb on - strandat 502.132 kb on - strandat 502.174 kb on + strand, within DVU0444at 502.174 kb on + strand, within DVU0444at 502.179 kb on + strand, within DVU0444at 502.182 kb on - strand, within DVU0444at 502.182 kb on - strand, within DVU0444at 502.185 kb on + strand, within DVU0444at 502.187 kb on - strand, within DVU0444at 502.216 kb on + strand, within DVU0444at 502.277 kb on - strand, within DVU0444at 502.284 kb on - strand, within DVU0444at 502.295 kb on + strand, within DVU0444at 502.303 kb on - strand, within DVU0444at 502.320 kb on + strand, within DVU0444at 502.323 kb on - strand, within DVU0444at 502.325 kb on + strand, within DVU0444at 502.356 kb on + strand, within DVU0444at 502.423 kb on + strand, within DVU0444at 502.425 kb on + strand, within DVU0444at 502.431 kb on - strand, within DVU0444at 502.431 kb on - strand, within DVU0444at 502.446 kb on + strand, within DVU0444at 502.471 kb on + strand, within DVU0444at 502.471 kb on + strand, within DVU0444at 502.471 kb on + strand, within DVU0444at 502.471 kb on + strand, within DVU0444at 502.471 kb on + strand, within DVU0444at 502.479 kb on - strand, within DVU0444at 502.479 kb on - strand, within DVU0444at 502.572 kb on - strand, within DVU0444at 502.572 kb on - strand, within DVU0444at 502.616 kb on + strand, within DVU0444at 502.640 kb on + strand, within DVU0444at 502.665 kb on + strand, within DVU0444at 502.691 kb on + strand, within DVU0444at 502.699 kb on - strand, within DVU0444at 502.842 kb on + strand, within DVU0444at 502.858 kb on - strand, within DVU0444at 502.862 kb on + strand, within DVU0444at 502.927 kb on - strand, within DVU0444at 502.947 kb on - strand, within DVU0444at 502.983 kb on - strand, within DVU0444at 503.044 kb on + strand, within DVU0444at 503.121 kb on - strand, within DVU0444at 503.121 kb on - strand, within DVU0444at 503.126 kb on - strand, within DVU0444at 503.142 kb on - strand, within DVU0444at 503.161 kb on + strand, within DVU0444at 503.212 kb on - strand, within DVU0444at 503.212 kb on - strand, within DVU0444at 503.224 kb on + strand, within DVU0444at 503.224 kb on + strand, within DVU0444at 503.232 kb on - strand, within DVU0444at 503.234 kb on + strand, within DVU0444at 503.242 kb on - strand, within DVU0444at 503.242 kb on - strand, within DVU0444at 503.248 kb on + strand, within DVU0444at 503.266 kb on - strand, within DVU0444at 503.320 kb on - strand, within DVU0444at 503.348 kb on + strand, within DVU0444at 503.349 kb on + strand, within DVU0444at 503.431 kb on + strand, within DVU0444at 503.459 kb on + strand, within DVU0444at 503.459 kb on + strand, within DVU0444at 503.505 kb on + strand, within DVU0444at 503.516 kb on + strand, within DVU0444at 503.553 kb on - strand, within DVU0444at 503.723 kb on - strand, within DVU0444at 503.756 kb on + strand, within DVU0444at 503.800 kb on + strand, within DVU0444at 503.863 kb on - strand, within DVU0444at 503.872 kb on - strand, within DVU0444at 503.881 kb on + strand, within DVU0444at 503.972 kb on + strandat 503.980 kb on - strandat 503.997 kb on + strandat 504.007 kb on - strandat 504.007 kb on - strandat 504.030 kb on + strandat 504.123 kb on + strandat 504.154 kb on - strandat 504.160 kb on + strandat 504.160 kb on + strandat 504.206 kb on - strandat 504.333 kb on - strandat 504.382 kb on + strand, within DVU0445at 504.427 kb on - strand, within DVU0445at 504.432 kb on - strand, within DVU0445at 504.457 kb on + strand, within DVU0445at 504.469 kb on + strand, within DVU0445at 504.484 kb on - strand, within DVU0445at 504.489 kb on + strand, within DVU0445at 504.497 kb on - strand, within DVU0445at 504.517 kb on - strand, within DVU0445at 504.561 kb on + strand, within DVU0445at 504.587 kb on + strand, within DVU0445at 504.587 kb on + strand, within DVU0445at 504.587 kb on + strand, within DVU0445at 504.595 kb on - strand, within DVU0445at 504.648 kb on - strand, within DVU0445at 504.648 kb on - strand, within DVU0445at 504.661 kb on - strand, within DVU0445at 504.663 kb on + strand, within DVU0445at 504.663 kb on + strand, within DVU0445at 504.671 kb on - strand, within DVU0445at 504.671 kb on - strand, within DVU0445at 504.671 kb on - strand, within DVU0445at 504.671 kb on - strand, within DVU0445at 504.697 kb on + strand, within DVU0445at 504.705 kb on - strand, within DVU0445at 504.800 kb on + strand, within DVU0445at 504.832 kb on - strand, within DVU0445at 504.848 kb on + strand, within DVU0445at 504.875 kb on - strand, within DVU0445at 504.904 kb on - strand, within DVU0445at 504.924 kb on - strand, within DVU0445at 504.930 kb on - strand, within DVU0445at 504.964 kb on + strand, within DVU0445at 504.972 kb on - strand, within DVU0445at 504.972 kb on - strand, within DVU0445at 504.990 kb on - strand, within DVU0445at 505.007 kb on + strand, within DVU0445at 505.015 kb on - strand, within DVU0445at 505.015 kb on - strand, within DVU0445at 505.015 kb on - strand, within DVU0445at 505.036 kb on + strand, within DVU0445at 505.156 kb on - strand, within DVU0445

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate (60mM) with Na2S as sulfur source + 0.1% Yeast Extract
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500,947 + -0.1
501,075 - -0.7
501,090 + +1.4
501,210 - +0.1
501,218 + -0.9
501,242 - +0.6
501,258 - +0.4
501,386 + DVU0443 0.26 -0.3
501,394 - DVU0443 0.27 +0.5
501,394 - DVU0443 0.27 -0.2
501,454 - DVU0443 0.35 -0.3
501,474 - DVU0443 0.38 +1.0
501,476 - DVU0443 0.38 -1.3
501,598 + DVU0443 0.55 +0.0
501,774 + DVU0443 0.79 -0.2
501,797 - DVU0443 0.82 +0.9
501,855 + DVU0443 0.90 +1.3
501,863 - -2.3
501,925 + -0.3
501,945 + -0.2
501,953 + +0.5
501,953 + -0.8
501,960 - +0.7
501,966 - -0.6
502,002 + +0.7
502,002 + -0.5
502,049 - -0.1
502,054 - -0.2
502,059 + -0.3
502,081 - +0.0
502,132 - -1.1
502,174 + DVU0444 0.11 +0.2
502,174 + DVU0444 0.11 -0.2
502,179 + DVU0444 0.11 -0.6
502,182 - DVU0444 0.11 -0.5
502,182 - DVU0444 0.11 -0.4
502,185 + DVU0444 0.11 -0.1
502,187 - DVU0444 0.11 -2.1
502,216 + DVU0444 0.13 -0.3
502,277 - DVU0444 0.15 -0.4
502,284 - DVU0444 0.16 +0.1
502,295 + DVU0444 0.16 +0.0
502,303 - DVU0444 0.16 -0.2
502,320 + DVU0444 0.17 -0.7
502,323 - DVU0444 0.17 -0.4
502,325 + DVU0444 0.17 -0.6
502,356 + DVU0444 0.19 -0.8
502,423 + DVU0444 0.22 +0.3
502,425 + DVU0444 0.22 -0.4
502,431 - DVU0444 0.22 +0.1
502,431 - DVU0444 0.22 -0.2
502,446 + DVU0444 0.23 -0.5
502,471 + DVU0444 0.24 -1.1
502,471 + DVU0444 0.24 -0.2
502,471 + DVU0444 0.24 -1.4
502,471 + DVU0444 0.24 -0.9
502,471 + DVU0444 0.24 -0.1
502,479 - DVU0444 0.24 -1.1
502,479 - DVU0444 0.24 -1.0
502,572 - DVU0444 0.29 -0.3
502,572 - DVU0444 0.29 -0.5
502,616 + DVU0444 0.30 -0.4
502,640 + DVU0444 0.32 -0.1
502,665 + DVU0444 0.33 -1.1
502,691 + DVU0444 0.34 -1.0
502,699 - DVU0444 0.34 +0.3
502,842 + DVU0444 0.41 +0.5
502,858 - DVU0444 0.41 -0.3
502,862 + DVU0444 0.42 +0.0
502,927 - DVU0444 0.44 -0.7
502,947 - DVU0444 0.45 -1.0
502,983 - DVU0444 0.47 -0.2
503,044 + DVU0444 0.50 -1.5
503,121 - DVU0444 0.53 +0.6
503,121 - DVU0444 0.53 -0.4
503,126 - DVU0444 0.53 -0.4
503,142 - DVU0444 0.54 -0.3
503,161 + DVU0444 0.55 -0.1
503,212 - DVU0444 0.57 -0.4
503,212 - DVU0444 0.57 +2.1
503,224 + DVU0444 0.58 +0.4
503,224 + DVU0444 0.58 -0.8
503,232 - DVU0444 0.58 +0.9
503,234 + DVU0444 0.58 -0.8
503,242 - DVU0444 0.59 -1.1
503,242 - DVU0444 0.59 +0.1
503,248 + DVU0444 0.59 -1.8
503,266 - DVU0444 0.60 -1.2
503,320 - DVU0444 0.62 -0.4
503,348 + DVU0444 0.63 -0.1
503,349 + DVU0444 0.63 -0.0
503,431 + DVU0444 0.67 -0.3
503,459 + DVU0444 0.68 -0.1
503,459 + DVU0444 0.68 -0.4
503,505 + DVU0444 0.70 +1.9
503,516 + DVU0444 0.71 +0.1
503,553 - DVU0444 0.73 +0.5
503,723 - DVU0444 0.80 -1.6
503,756 + DVU0444 0.82 +0.0
503,800 + DVU0444 0.84 -0.4
503,863 - DVU0444 0.87 +0.1
503,872 - DVU0444 0.87 -0.2
503,881 + DVU0444 0.87 -0.6
503,972 + +0.5
503,980 - +0.0
503,997 + -1.0
504,007 - -0.1
504,007 - -0.1
504,030 + -0.0
504,123 + -0.4
504,154 - -1.0
504,160 + -2.0
504,160 + +0.8
504,206 - -0.6
504,333 - -3.8
504,382 + DVU0445 0.12 -0.7
504,427 - DVU0445 0.15 -2.8
504,432 - DVU0445 0.15 -0.4
504,457 + DVU0445 0.17 -0.0
504,469 + DVU0445 0.17 -0.2
504,484 - DVU0445 0.18 -0.3
504,489 + DVU0445 0.19 -0.4
504,497 - DVU0445 0.19 -1.4
504,517 - DVU0445 0.20 -0.3
504,561 + DVU0445 0.23 -0.2
504,587 + DVU0445 0.24 -0.3
504,587 + DVU0445 0.24 -0.5
504,587 + DVU0445 0.24 +0.1
504,595 - DVU0445 0.25 -0.1
504,648 - DVU0445 0.28 +0.0
504,648 - DVU0445 0.28 -0.2
504,661 - DVU0445 0.29 -3.5
504,663 + DVU0445 0.29 +0.1
504,663 + DVU0445 0.29 +0.1
504,671 - DVU0445 0.29 -0.9
504,671 - DVU0445 0.29 -0.2
504,671 - DVU0445 0.29 +0.1
504,671 - DVU0445 0.29 -1.3
504,697 + DVU0445 0.31 +2.6
504,705 - DVU0445 0.31 -0.0
504,800 + DVU0445 0.37 -0.6
504,832 - DVU0445 0.38 +0.2
504,848 + DVU0445 0.39 +1.3
504,875 - DVU0445 0.41 -0.3
504,904 - DVU0445 0.43 -1.1
504,924 - DVU0445 0.44 -0.6
504,930 - DVU0445 0.44 +0.4
504,964 + DVU0445 0.46 +0.3
504,972 - DVU0445 0.47 +1.2
504,972 - DVU0445 0.47 +0.3
504,990 - DVU0445 0.48 -0.2
505,007 + DVU0445 0.49 +0.1
505,015 - DVU0445 0.49 -0.4
505,015 - DVU0445 0.49 +0.2
505,015 - DVU0445 0.49 +0.1
505,036 + DVU0445 0.50 -4.7
505,156 - DVU0445 0.57 -0.2

Or see this region's nucleotide sequence