Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS24705

Experiment: JK16

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS24700 and ECOLIN_RS24705 overlap by 1 nucleotidesECOLIN_RS24705 and ECOLIN_RS24710 are separated by 255 nucleotides ECOLIN_RS24700: ECOLIN_RS24700 - LPS export ABC transporter permease LptF, at 4,970,108 to 4,971,208 _RS24700 ECOLIN_RS24705: ECOLIN_RS24705 - LPS export ABC transporter permease LptG, at 4,971,208 to 4,972,290 _RS24705 ECOLIN_RS24710: ECOLIN_RS24710 - helicase HerA-like C-terminal domain-containing protein, at 4,972,546 to 4,974,048 _RS24710 Position (kb) 4971 4972 4973Strain fitness (log2 ratio) -1 0 1at 4972.420 kb on - strandat 4972.420 kb on - strandat 4972.717 kb on + strand, within ECOLIN_RS24710at 4972.749 kb on + strand, within ECOLIN_RS24710at 4972.764 kb on + strand, within ECOLIN_RS24710at 4972.775 kb on - strand, within ECOLIN_RS24710at 4973.048 kb on - strand, within ECOLIN_RS24710at 4973.181 kb on + strand, within ECOLIN_RS24710at 4973.215 kb on + strand, within ECOLIN_RS24710

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Per-strain Table

Position Strand Gene LocusTag Fraction JK16
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4,972,420 - -0.1
4,972,420 - -0.1
4,972,717 + ECOLIN_RS24710 0.11 +0.3
4,972,749 + ECOLIN_RS24710 0.14 -0.1
4,972,764 + ECOLIN_RS24710 0.15 -1.2
4,972,775 - ECOLIN_RS24710 0.15 +0.3
4,973,048 - ECOLIN_RS24710 0.33 +0.2
4,973,181 + ECOLIN_RS24710 0.42 +0.7
4,973,215 + ECOLIN_RS24710 0.45 -1.4

Or see this region's nucleotide sequence