Experiment: JK16
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS21840 and ECOLIN_RS21845 are separated by 39 nucleotides ECOLIN_RS21845 and ECOLIN_RS21850 are separated by 47 nucleotides
ECOLIN_RS21840: ECOLIN_RS21840 - class I adenylate cyclase, at 4,387,983 to 4,390,529
_RS21840
ECOLIN_RS21845: ECOLIN_RS21845 - iron donor protein CyaY, at 4,390,569 to 4,390,889
_RS21845
ECOLIN_RS21850: ECOLIN_RS21850 - hypothetical protein, at 4,390,937 to 4,392,256
_RS21850
Position (kb) 4390
4391 Strain fitness (log2 ratio) -1
0
1
2 at 4390.101 kb on + strand, within ECOLIN_RS21840 at 4390.101 kb on + strand, within ECOLIN_RS21840 at 4390.247 kb on + strand, within ECOLIN_RS21840 at 4390.254 kb on + strand, within ECOLIN_RS21840 at 4390.287 kb on + strand at 4390.407 kb on + strand at 4390.407 kb on + strand at 4390.519 kb on - strand at 4390.533 kb on + strand at 4390.684 kb on + strand, within ECOLIN_RS21845 at 4390.767 kb on - strand, within ECOLIN_RS21845 at 4390.777 kb on - strand, within ECOLIN_RS21845 at 4390.896 kb on - strand at 4390.907 kb on - strand at 4390.999 kb on + strand at 4391.074 kb on + strand, within ECOLIN_RS21850 at 4391.074 kb on + strand, within ECOLIN_RS21850 at 4391.081 kb on + strand, within ECOLIN_RS21850 at 4391.090 kb on - strand, within ECOLIN_RS21850 at 4391.101 kb on + strand, within ECOLIN_RS21850 at 4391.102 kb on - strand, within ECOLIN_RS21850 at 4391.104 kb on - strand, within ECOLIN_RS21850 at 4391.140 kb on + strand, within ECOLIN_RS21850 at 4391.168 kb on - strand, within ECOLIN_RS21850 at 4391.193 kb on - strand, within ECOLIN_RS21850 at 4391.193 kb on - strand, within ECOLIN_RS21850 at 4391.193 kb on - strand, within ECOLIN_RS21850 at 4391.209 kb on - strand, within ECOLIN_RS21850 at 4391.317 kb on - strand, within ECOLIN_RS21850 at 4391.384 kb on + strand, within ECOLIN_RS21850 at 4391.477 kb on + strand, within ECOLIN_RS21850 at 4391.499 kb on - strand, within ECOLIN_RS21850 at 4391.680 kb on + strand, within ECOLIN_RS21850 at 4391.717 kb on + strand, within ECOLIN_RS21850 at 4391.717 kb on + strand, within ECOLIN_RS21850 at 4391.723 kb on - strand, within ECOLIN_RS21850 at 4391.789 kb on - strand, within ECOLIN_RS21850 at 4391.789 kb on - strand, within ECOLIN_RS21850 at 4391.794 kb on + strand, within ECOLIN_RS21850 at 4391.845 kb on + strand, within ECOLIN_RS21850 at 4391.845 kb on + strand, within ECOLIN_RS21850 at 4391.871 kb on + strand, within ECOLIN_RS21850 at 4391.871 kb on + strand, within ECOLIN_RS21850 at 4391.872 kb on - strand, within ECOLIN_RS21850 at 4391.872 kb on - strand, within ECOLIN_RS21850 at 4391.878 kb on + strand, within ECOLIN_RS21850 at 4391.879 kb on - strand, within ECOLIN_RS21850 at 4391.880 kb on + strand, within ECOLIN_RS21850 at 4391.880 kb on + strand, within ECOLIN_RS21850 at 4391.880 kb on + strand, within ECOLIN_RS21850 at 4391.881 kb on - strand, within ECOLIN_RS21850
Per-strain Table
Position Strand Gene LocusTag Fraction JK16 remove 4,390,101 + ECOLIN_RS21840 0.83 -0.8 4,390,101 + ECOLIN_RS21840 0.83 -1.1 4,390,247 + ECOLIN_RS21840 0.89 -0.1 4,390,254 + ECOLIN_RS21840 0.89 -0.1 4,390,287 + -0.9 4,390,407 + -0.7 4,390,407 + -1.2 4,390,519 - -0.2 4,390,533 + +0.2 4,390,684 + ECOLIN_RS21845 0.36 +0.0 4,390,767 - ECOLIN_RS21845 0.62 -0.4 4,390,777 - ECOLIN_RS21845 0.65 +0.3 4,390,896 - -0.7 4,390,907 - -0.3 4,390,999 + +0.1 4,391,074 + ECOLIN_RS21850 0.10 +1.8 4,391,074 + ECOLIN_RS21850 0.10 +0.0 4,391,081 + ECOLIN_RS21850 0.11 -0.4 4,391,090 - ECOLIN_RS21850 0.12 +1.0 4,391,101 + ECOLIN_RS21850 0.12 -0.9 4,391,102 - ECOLIN_RS21850 0.12 +0.1 4,391,104 - ECOLIN_RS21850 0.13 +0.3 4,391,140 + ECOLIN_RS21850 0.15 +0.2 4,391,168 - ECOLIN_RS21850 0.17 -0.1 4,391,193 - ECOLIN_RS21850 0.19 -0.0 4,391,193 - ECOLIN_RS21850 0.19 +0.2 4,391,193 - ECOLIN_RS21850 0.19 +0.4 4,391,209 - ECOLIN_RS21850 0.21 +1.9 4,391,317 - ECOLIN_RS21850 0.29 -0.1 4,391,384 + ECOLIN_RS21850 0.34 +0.2 4,391,477 + ECOLIN_RS21850 0.41 +0.2 4,391,499 - ECOLIN_RS21850 0.43 -0.5 4,391,680 + ECOLIN_RS21850 0.56 +0.8 4,391,717 + ECOLIN_RS21850 0.59 +0.3 4,391,717 + ECOLIN_RS21850 0.59 +0.1 4,391,723 - ECOLIN_RS21850 0.60 +0.2 4,391,789 - ECOLIN_RS21850 0.65 -1.6 4,391,789 - ECOLIN_RS21850 0.65 +0.1 4,391,794 + ECOLIN_RS21850 0.65 +0.1 4,391,845 + ECOLIN_RS21850 0.69 -0.1 4,391,845 + ECOLIN_RS21850 0.69 +0.1 4,391,871 + ECOLIN_RS21850 0.71 +0.1 4,391,871 + ECOLIN_RS21850 0.71 +0.2 4,391,872 - ECOLIN_RS21850 0.71 +0.4 4,391,872 - ECOLIN_RS21850 0.71 +0.2 4,391,878 + ECOLIN_RS21850 0.71 +0.0 4,391,879 - ECOLIN_RS21850 0.71 -0.2 4,391,880 + ECOLIN_RS21850 0.71 -0.2 4,391,880 + ECOLIN_RS21850 0.71 +0.0 4,391,880 + ECOLIN_RS21850 0.71 -0.3 4,391,881 - ECOLIN_RS21850 0.72 -1.0
Or see this region's nucleotide sequence