Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS17395

Experiment: JK16

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS17390 and ECOLIN_RS17395 are separated by 70 nucleotidesECOLIN_RS17395 and ECOLIN_RS17400 are separated by 74 nucleotides ECOLIN_RS17390: ECOLIN_RS17390 - TRAP transporter large permease subunit, at 3,502,957 to 3,504,261 _RS17390 ECOLIN_RS17395: ECOLIN_RS17395 - cell division protein FtsP, at 3,504,332 to 3,505,744 _RS17395 ECOLIN_RS17400: ECOLIN_RS17400 - 1-acylglycerol-3-phosphate O-acyltransferase, at 3,505,819 to 3,506,556 _RS17400 Position (kb) 3504 3505 3506Strain fitness (log2 ratio) -2 -1 0 1at 3503.343 kb on + strand, within ECOLIN_RS17390at 3503.538 kb on - strand, within ECOLIN_RS17390at 3503.799 kb on - strand, within ECOLIN_RS17390at 3504.060 kb on + strand, within ECOLIN_RS17390at 3504.207 kb on + strandat 3504.262 kb on + strandat 3504.262 kb on + strandat 3504.280 kb on + strandat 3504.553 kb on + strand, within ECOLIN_RS17395at 3505.590 kb on - strand, within ECOLIN_RS17395at 3506.590 kb on + strandat 3506.623 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction JK16
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3,503,343 + ECOLIN_RS17390 0.30 +1.0
3,503,538 - ECOLIN_RS17390 0.45 -0.3
3,503,799 - ECOLIN_RS17390 0.65 +0.7
3,504,060 + ECOLIN_RS17390 0.85 -1.8
3,504,207 + -0.1
3,504,262 + +0.2
3,504,262 + -0.4
3,504,280 + +0.8
3,504,553 + ECOLIN_RS17395 0.16 -0.5
3,505,590 - ECOLIN_RS17395 0.89 -1.0
3,506,590 + -1.2
3,506,623 - -2.1

Or see this region's nucleotide sequence