Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS13135

Experiment: JK16

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS13125 and ECOLIN_RS13130 are separated by 3 nucleotidesECOLIN_RS13130 and ECOLIN_RS13135 overlap by 1 nucleotidesECOLIN_RS13135 and ECOLIN_RS13140 overlap by 4 nucleotidesECOLIN_RS13140 and ECOLIN_RS13145 overlap by 1 nucleotides ECOLIN_RS13125: ECOLIN_RS13125 - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 2,624,365 to 2,625,504 _RS13125 ECOLIN_RS13130: ECOLIN_RS13130 - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 2,625,508 to 2,626,476 _RS13130 ECOLIN_RS13135: ECOLIN_RS13135 - bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, at 2,626,476 to 2,628,458 _RS13135 ECOLIN_RS13140: ECOLIN_RS13140 - 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase, at 2,628,455 to 2,629,345 _RS13140 ECOLIN_RS13145: ECOLIN_RS13145 - lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase, at 2,629,345 to 2,630,997 _RS13145 Position (kb) 2626 2627 2628 2629Strain fitness (log2 ratio) -1 0 1at 2628.290 kb on + strandat 2628.472 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction JK16
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2,628,290 + -0.0
2,628,472 - +0.4

Or see this region's nucleotide sequence