Experiment: JK16
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS20480 and ECOLIN_RS20485 overlap by 8 nucleotides ECOLIN_RS20485 and ECOLIN_RS20490 overlap by 7 nucleotides ECOLIN_RS20490 and ECOLIN_RS20495 are separated by 46 nucleotides
ECOLIN_RS20480: ECOLIN_RS20480 - 3-keto-L-gulonate-6-phosphate decarboxylase UlaD, at 4,120,386 to 4,121,048
_RS20480
ECOLIN_RS20485: ECOLIN_RS20485 - L-ribulose-5-phosphate 3-epimerase, at 4,121,041 to 4,121,901
_RS20485
ECOLIN_RS20490: ECOLIN_RS20490 - L-ribulose-5-phosphate 4-epimerase, at 4,121,895 to 4,122,590
_RS20490
ECOLIN_RS20495: ECOLIN_RS20495 - aldehyde dehydrogenase AldB, at 4,122,637 to 4,124,175
_RS20495
Position (kb) 4121
4122
4123 Strain fitness (log2 ratio) -1
0
1 at 4121.046 kb on + strand at 4121.065 kb on + strand at 4121.244 kb on + strand, within ECOLIN_RS20485 at 4121.244 kb on + strand, within ECOLIN_RS20485 at 4121.370 kb on + strand, within ECOLIN_RS20485 at 4121.371 kb on - strand, within ECOLIN_RS20485 at 4121.373 kb on + strand, within ECOLIN_RS20485 at 4121.374 kb on - strand, within ECOLIN_RS20485 at 4121.390 kb on - strand, within ECOLIN_RS20485 at 4121.398 kb on + strand, within ECOLIN_RS20485
Per-strain Table
Position Strand Gene LocusTag Fraction JK16 remove 4,121,046 + +0.2 4,121,065 + -0.2 4,121,244 + ECOLIN_RS20485 0.24 -0.1 4,121,244 + ECOLIN_RS20485 0.24 -0.4 4,121,370 + ECOLIN_RS20485 0.38 -0.1 4,121,371 - ECOLIN_RS20485 0.38 +0.3 4,121,373 + ECOLIN_RS20485 0.39 +0.9 4,121,374 - ECOLIN_RS20485 0.39 -0.1 4,121,390 - ECOLIN_RS20485 0.41 +0.6 4,121,398 + ECOLIN_RS20485 0.41 +0.2
Or see this region's nucleotide sequence