Experiment: JK16
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS18860 and ECOLIN_RS18865 are separated by 129 nucleotides ECOLIN_RS18865 and ECOLIN_RS18870 are separated by 14 nucleotides ECOLIN_RS18870 and ECOLIN_RS18875 are separated by 51 nucleotides
ECOLIN_RS18860: ECOLIN_RS18860 - DNA-protecting protein DprA, at 3,793,189 to 3,794,313
_RS18860
ECOLIN_RS18865: ECOLIN_RS18865 - peptide deformylase, at 3,794,443 to 3,794,952
_RS18865
ECOLIN_RS18870: ECOLIN_RS18870 - methionyl-tRNA formyltransferase, at 3,794,967 to 3,795,914
_RS18870
ECOLIN_RS18875: ECOLIN_RS18875 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 3,795,966 to 3,797,255
_RS18875
Position (kb) 3794
3795
3796 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 3794.093 kb on - strand, within ECOLIN_RS18860 at 3794.093 kb on - strand, within ECOLIN_RS18860 at 3794.181 kb on + strand, within ECOLIN_RS18860 at 3794.181 kb on + strand, within ECOLIN_RS18860 at 3794.182 kb on - strand, within ECOLIN_RS18860 at 3794.201 kb on - strand at 3794.215 kb on - strand at 3794.254 kb on - strand at 3794.264 kb on + strand at 3794.264 kb on + strand at 3794.281 kb on - strand at 3794.330 kb on + strand at 3794.340 kb on + strand at 3794.397 kb on + strand at 3794.406 kb on + strand at 3794.442 kb on + strand at 3794.878 kb on + strand, within ECOLIN_RS18865 at 3795.953 kb on + strand at 3796.754 kb on + strand, within ECOLIN_RS18875
Per-strain Table
Position Strand Gene LocusTag Fraction JK16 remove 3,794,093 - ECOLIN_RS18860 0.80 +0.4 3,794,093 - ECOLIN_RS18860 0.80 -0.1 3,794,181 + ECOLIN_RS18860 0.88 -0.5 3,794,181 + ECOLIN_RS18860 0.88 +0.2 3,794,182 - ECOLIN_RS18860 0.88 -0.2 3,794,201 - +0.2 3,794,215 - -1.4 3,794,254 - -0.4 3,794,264 + +0.9 3,794,264 + -2.6 3,794,281 - +0.1 3,794,330 + -0.4 3,794,340 + -0.1 3,794,397 + -0.7 3,794,406 + -0.2 3,794,442 + -0.8 3,794,878 + ECOLIN_RS18865 0.85 +4.5 3,795,953 + -0.6 3,796,754 + ECOLIN_RS18875 0.61 +0.5
Or see this region's nucleotide sequence