Experiment: JK16
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS02415 and ECOLIN_RS02420 are separated by 406 nucleotides ECOLIN_RS02420 and ECOLIN_RS02425 are separated by 75 nucleotides
ECOLIN_RS02415: ECOLIN_RS02415 - phosphate regulon sensor histidine kinase PhoR, at 492,703 to 493,998
_RS02415
ECOLIN_RS02420: ECOLIN_RS02420 - branched-chain amino acid transporter carrier protein BrnQ, at 494,405 to 495,724
_RS02420
ECOLIN_RS02425: ECOLIN_RS02425 - proline-specific permease ProY, at 495,800 to 497,173
_RS02425
Position (kb) 494
495
496 Strain fitness (log2 ratio) -2
-1
0
1
2 at 493.499 kb on + strand, within ECOLIN_RS02415 at 493.499 kb on + strand, within ECOLIN_RS02415 at 493.725 kb on - strand, within ECOLIN_RS02415 at 494.145 kb on - strand at 494.330 kb on - strand at 494.331 kb on + strand at 494.485 kb on + strand at 494.905 kb on + strand, within ECOLIN_RS02420 at 495.021 kb on + strand, within ECOLIN_RS02420 at 495.329 kb on + strand, within ECOLIN_RS02420 at 495.831 kb on + strand at 495.846 kb on + strand at 495.846 kb on + strand at 495.853 kb on + strand at 495.890 kb on + strand at 495.890 kb on + strand at 495.965 kb on + strand, within ECOLIN_RS02425 at 496.082 kb on + strand, within ECOLIN_RS02425 at 496.136 kb on + strand, within ECOLIN_RS02425 at 496.136 kb on + strand, within ECOLIN_RS02425 at 496.136 kb on + strand, within ECOLIN_RS02425 at 496.136 kb on + strand, within ECOLIN_RS02425 at 496.137 kb on - strand, within ECOLIN_RS02425 at 496.561 kb on + strand, within ECOLIN_RS02425 at 496.568 kb on - strand, within ECOLIN_RS02425 at 496.693 kb on + strand, within ECOLIN_RS02425
Per-strain Table
Position Strand Gene LocusTag Fraction JK16 remove 493,499 + ECOLIN_RS02415 0.61 -1.4 493,499 + ECOLIN_RS02415 0.61 +0.8 493,725 - ECOLIN_RS02415 0.79 -1.9 494,145 - +0.5 494,330 - +0.7 494,331 + +0.1 494,485 + -0.4 494,905 + ECOLIN_RS02420 0.38 -0.5 495,021 + ECOLIN_RS02420 0.47 -0.0 495,329 + ECOLIN_RS02420 0.70 -0.5 495,831 + +0.4 495,846 + -0.5 495,846 + -1.1 495,853 + +0.3 495,890 + +0.9 495,890 + +0.4 495,965 + ECOLIN_RS02425 0.12 -0.4 496,082 + ECOLIN_RS02425 0.21 +2.4 496,136 + ECOLIN_RS02425 0.24 +0.3 496,136 + ECOLIN_RS02425 0.24 +2.0 496,136 + ECOLIN_RS02425 0.24 +0.2 496,136 + ECOLIN_RS02425 0.24 +2.6 496,137 - ECOLIN_RS02425 0.25 +2.6 496,561 + ECOLIN_RS02425 0.55 +0.1 496,568 - ECOLIN_RS02425 0.56 +0.7 496,693 + ECOLIN_RS02425 0.65 -0.5
Or see this region's nucleotide sequence