Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09530 and HMPREF1078_RS09535 are separated by 122 nucleotides HMPREF1078_RS09535 and HMPREF1078_RS09540 are separated by 179 nucleotides HMPREF1078_RS09540 and HMPREF1078_RS09545 are separated by 33 nucleotides
HMPREF1078_RS09530: HMPREF1078_RS09530 - ABC transporter permease, at 494,363 to 496,693
_RS09530
HMPREF1078_RS09535: HMPREF1078_RS09535 - ABC transporter ATP-binding protein, at 496,816 to 497,496
_RS09535
HMPREF1078_RS09540: HMPREF1078_RS09540 - FtsX-like permease family protein, at 497,676 to 500,048
_RS09540
HMPREF1078_RS09545: HMPREF1078_RS09545 - ABC transporter permease, at 500,082 to 502,448
_RS09545
Position (kb) 497
498
499
500
501 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 496.688 kb on - strand at 496.698 kb on + strand at 496.698 kb on + strand at 496.698 kb on + strand at 496.699 kb on - strand at 496.699 kb on - strand at 496.707 kb on + strand at 496.729 kb on + strand at 496.730 kb on + strand at 496.747 kb on - strand at 496.747 kb on - strand at 496.768 kb on + strand at 496.796 kb on + strand at 496.797 kb on - strand at 496.846 kb on - strand at 497.169 kb on - strand, within HMPREF1078_RS09535 at 497.169 kb on - strand, within HMPREF1078_RS09535 at 497.172 kb on + strand, within HMPREF1078_RS09535 at 497.172 kb on + strand, within HMPREF1078_RS09535 at 497.173 kb on - strand, within HMPREF1078_RS09535 at 497.173 kb on - strand, within HMPREF1078_RS09535 at 497.253 kb on + strand, within HMPREF1078_RS09535 at 497.309 kb on + strand, within HMPREF1078_RS09535 at 497.350 kb on - strand, within HMPREF1078_RS09535 at 497.502 kb on + strand at 497.503 kb on - strand at 497.534 kb on + strand at 497.534 kb on + strand at 497.538 kb on + strand at 497.538 kb on + strand at 497.540 kb on + strand at 497.566 kb on - strand at 497.579 kb on - strand at 497.586 kb on + strand at 497.642 kb on + strand at 497.646 kb on - strand at 497.743 kb on - strand at 497.846 kb on - strand at 497.907 kb on + strand at 497.914 kb on - strand, within HMPREF1078_RS09540 at 497.914 kb on - strand, within HMPREF1078_RS09540 at 497.931 kb on - strand, within HMPREF1078_RS09540 at 498.100 kb on + strand, within HMPREF1078_RS09540 at 498.272 kb on + strand, within HMPREF1078_RS09540 at 498.273 kb on - strand, within HMPREF1078_RS09540 at 498.273 kb on - strand, within HMPREF1078_RS09540 at 498.274 kb on + strand, within HMPREF1078_RS09540 at 498.275 kb on - strand, within HMPREF1078_RS09540 at 498.275 kb on - strand, within HMPREF1078_RS09540 at 498.283 kb on + strand, within HMPREF1078_RS09540 at 498.283 kb on + strand, within HMPREF1078_RS09540 at 498.300 kb on - strand, within HMPREF1078_RS09540 at 498.305 kb on - strand, within HMPREF1078_RS09540 at 498.335 kb on + strand, within HMPREF1078_RS09540 at 498.338 kb on - strand, within HMPREF1078_RS09540 at 498.460 kb on - strand, within HMPREF1078_RS09540 at 498.506 kb on - strand, within HMPREF1078_RS09540 at 498.519 kb on - strand, within HMPREF1078_RS09540 at 498.558 kb on - strand, within HMPREF1078_RS09540 at 498.558 kb on - strand, within HMPREF1078_RS09540 at 498.644 kb on + strand, within HMPREF1078_RS09540 at 498.645 kb on - strand, within HMPREF1078_RS09540 at 498.674 kb on + strand, within HMPREF1078_RS09540 at 498.682 kb on + strand, within HMPREF1078_RS09540 at 498.683 kb on - strand, within HMPREF1078_RS09540 at 498.697 kb on + strand, within HMPREF1078_RS09540 at 498.698 kb on - strand, within HMPREF1078_RS09540 at 498.725 kb on + strand, within HMPREF1078_RS09540 at 498.725 kb on + strand, within HMPREF1078_RS09540 at 498.726 kb on - strand, within HMPREF1078_RS09540 at 498.726 kb on - strand, within HMPREF1078_RS09540 at 498.726 kb on - strand, within HMPREF1078_RS09540 at 498.727 kb on + strand, within HMPREF1078_RS09540 at 498.727 kb on + strand, within HMPREF1078_RS09540 at 498.728 kb on - strand, within HMPREF1078_RS09540 at 498.728 kb on - strand, within HMPREF1078_RS09540 at 498.927 kb on + strand, within HMPREF1078_RS09540 at 498.928 kb on - strand, within HMPREF1078_RS09540 at 498.948 kb on + strand, within HMPREF1078_RS09540 at 498.975 kb on + strand, within HMPREF1078_RS09540 at 498.982 kb on + strand, within HMPREF1078_RS09540 at 499.016 kb on + strand, within HMPREF1078_RS09540 at 499.017 kb on - strand, within HMPREF1078_RS09540 at 499.044 kb on + strand, within HMPREF1078_RS09540 at 499.157 kb on + strand, within HMPREF1078_RS09540 at 499.158 kb on - strand, within HMPREF1078_RS09540 at 499.160 kb on - strand, within HMPREF1078_RS09540 at 499.212 kb on - strand, within HMPREF1078_RS09540 at 499.241 kb on + strand, within HMPREF1078_RS09540 at 499.242 kb on - strand, within HMPREF1078_RS09540 at 499.268 kb on + strand, within HMPREF1078_RS09540 at 499.269 kb on - strand, within HMPREF1078_RS09540 at 499.270 kb on + strand, within HMPREF1078_RS09540 at 499.328 kb on + strand, within HMPREF1078_RS09540 at 499.328 kb on + strand, within HMPREF1078_RS09540 at 499.352 kb on + strand, within HMPREF1078_RS09540 at 499.393 kb on + strand, within HMPREF1078_RS09540 at 499.458 kb on - strand, within HMPREF1078_RS09540 at 499.458 kb on - strand, within HMPREF1078_RS09540 at 499.462 kb on + strand, within HMPREF1078_RS09540 at 499.604 kb on + strand, within HMPREF1078_RS09540 at 499.604 kb on + strand, within HMPREF1078_RS09540 at 499.605 kb on - strand, within HMPREF1078_RS09540 at 499.609 kb on + strand, within HMPREF1078_RS09540 at 499.679 kb on + strand, within HMPREF1078_RS09540 at 499.680 kb on - strand, within HMPREF1078_RS09540 at 499.697 kb on + strand, within HMPREF1078_RS09540 at 499.698 kb on - strand, within HMPREF1078_RS09540 at 499.698 kb on - strand, within HMPREF1078_RS09540 at 499.700 kb on - strand, within HMPREF1078_RS09540 at 499.711 kb on + strand, within HMPREF1078_RS09540 at 499.743 kb on - strand, within HMPREF1078_RS09540 at 499.759 kb on + strand, within HMPREF1078_RS09540 at 499.759 kb on + strand, within HMPREF1078_RS09540 at 499.759 kb on + strand, within HMPREF1078_RS09540 at 499.759 kb on + strand, within HMPREF1078_RS09540 at 499.838 kb on - strand at 499.862 kb on + strand at 499.865 kb on - strand at 499.865 kb on - strand at 499.873 kb on + strand at 499.910 kb on + strand at 499.916 kb on - strand at 499.930 kb on + strand at 499.998 kb on - strand at 500.048 kb on + strand at 500.052 kb on + strand at 500.053 kb on - strand at 500.100 kb on - strand at 500.100 kb on - strand at 500.137 kb on + strand at 500.215 kb on + strand at 500.248 kb on + strand at 500.352 kb on - strand, within HMPREF1078_RS09545 at 500.396 kb on + strand, within HMPREF1078_RS09545 at 500.399 kb on - strand, within HMPREF1078_RS09545 at 500.482 kb on + strand, within HMPREF1078_RS09545 at 500.482 kb on + strand, within HMPREF1078_RS09545 at 500.483 kb on - strand, within HMPREF1078_RS09545 at 500.483 kb on - strand, within HMPREF1078_RS09545 at 500.496 kb on - strand, within HMPREF1078_RS09545 at 500.501 kb on + strand, within HMPREF1078_RS09545 at 500.502 kb on - strand, within HMPREF1078_RS09545 at 500.504 kb on - strand, within HMPREF1078_RS09545 at 500.506 kb on + strand, within HMPREF1078_RS09545 at 500.538 kb on + strand, within HMPREF1078_RS09545 at 500.538 kb on + strand, within HMPREF1078_RS09545 at 500.539 kb on - strand, within HMPREF1078_RS09545 at 500.539 kb on - strand, within HMPREF1078_RS09545 at 500.570 kb on + strand, within HMPREF1078_RS09545 at 500.617 kb on + strand, within HMPREF1078_RS09545 at 500.617 kb on + strand, within HMPREF1078_RS09545 at 500.617 kb on + strand, within HMPREF1078_RS09545 at 500.617 kb on + strand, within HMPREF1078_RS09545 at 500.617 kb on + strand, within HMPREF1078_RS09545 at 500.618 kb on - strand, within HMPREF1078_RS09545 at 500.622 kb on - strand, within HMPREF1078_RS09545 at 500.622 kb on - strand, within HMPREF1078_RS09545 at 500.622 kb on - strand, within HMPREF1078_RS09545 at 500.672 kb on + strand, within HMPREF1078_RS09545 at 500.673 kb on - strand, within HMPREF1078_RS09545 at 500.686 kb on - strand, within HMPREF1078_RS09545 at 500.687 kb on - strand, within HMPREF1078_RS09545 at 500.687 kb on - strand, within HMPREF1078_RS09545 at 500.723 kb on + strand, within HMPREF1078_RS09545 at 500.736 kb on + strand, within HMPREF1078_RS09545 at 500.736 kb on + strand, within HMPREF1078_RS09545 at 500.736 kb on + strand, within HMPREF1078_RS09545 at 500.905 kb on + strand, within HMPREF1078_RS09545 at 500.906 kb on - strand, within HMPREF1078_RS09545 at 500.906 kb on - strand, within HMPREF1078_RS09545 at 500.910 kb on - strand, within HMPREF1078_RS09545 at 500.957 kb on + strand, within HMPREF1078_RS09545 at 500.958 kb on - strand, within HMPREF1078_RS09545 at 500.990 kb on - strand, within HMPREF1078_RS09545 at 500.990 kb on - strand, within HMPREF1078_RS09545 at 501.010 kb on - strand, within HMPREF1078_RS09545 at 501.047 kb on + strand, within HMPREF1078_RS09545
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 remove 496,688 - +1.1 496,698 + +0.2 496,698 + +1.3 496,698 + +2.2 496,699 - +1.0 496,699 - -0.7 496,707 + +0.2 496,729 + +1.6 496,730 + +1.2 496,747 - -1.5 496,747 - -0.2 496,768 + -1.1 496,796 + -0.7 496,797 - +0.2 496,846 - -0.7 497,169 - HMPREF1078_RS09535 0.52 -0.3 497,169 - HMPREF1078_RS09535 0.52 -1.6 497,172 + HMPREF1078_RS09535 0.52 -0.2 497,172 + HMPREF1078_RS09535 0.52 +0.3 497,173 - HMPREF1078_RS09535 0.52 +0.1 497,173 - HMPREF1078_RS09535 0.52 -0.6 497,253 + HMPREF1078_RS09535 0.64 -1.5 497,309 + HMPREF1078_RS09535 0.72 -0.5 497,350 - HMPREF1078_RS09535 0.78 -1.6 497,502 + +0.2 497,503 - +0.0 497,534 + -1.9 497,534 + +2.1 497,538 + -1.1 497,538 + +1.1 497,540 + -1.4 497,566 - +0.2 497,579 - -2.0 497,586 + -2.0 497,642 + -2.2 497,646 - +0.3 497,743 - +0.0 497,846 - +0.8 497,907 + +1.6 497,914 - HMPREF1078_RS09540 0.10 +0.7 497,914 - HMPREF1078_RS09540 0.10 -0.4 497,931 - HMPREF1078_RS09540 0.11 +0.2 498,100 + HMPREF1078_RS09540 0.18 +1.1 498,272 + HMPREF1078_RS09540 0.25 -0.6 498,273 - HMPREF1078_RS09540 0.25 +0.3 498,273 - HMPREF1078_RS09540 0.25 -0.2 498,274 + HMPREF1078_RS09540 0.25 -2.4 498,275 - HMPREF1078_RS09540 0.25 +1.5 498,275 - HMPREF1078_RS09540 0.25 -1.5 498,283 + HMPREF1078_RS09540 0.26 -1.9 498,283 + HMPREF1078_RS09540 0.26 -0.3 498,300 - HMPREF1078_RS09540 0.26 +0.1 498,305 - HMPREF1078_RS09540 0.27 -0.4 498,335 + HMPREF1078_RS09540 0.28 +1.3 498,338 - HMPREF1078_RS09540 0.28 -0.2 498,460 - HMPREF1078_RS09540 0.33 +1.3 498,506 - HMPREF1078_RS09540 0.35 -0.2 498,519 - HMPREF1078_RS09540 0.36 -0.9 498,558 - HMPREF1078_RS09540 0.37 -0.4 498,558 - HMPREF1078_RS09540 0.37 +0.9 498,644 + HMPREF1078_RS09540 0.41 +1.2 498,645 - HMPREF1078_RS09540 0.41 -0.1 498,674 + HMPREF1078_RS09540 0.42 -0.8 498,682 + HMPREF1078_RS09540 0.42 -0.6 498,683 - HMPREF1078_RS09540 0.42 +0.9 498,697 + HMPREF1078_RS09540 0.43 +0.3 498,698 - HMPREF1078_RS09540 0.43 +0.6 498,725 + HMPREF1078_RS09540 0.44 +3.1 498,725 + HMPREF1078_RS09540 0.44 -0.3 498,726 - HMPREF1078_RS09540 0.44 -0.6 498,726 - HMPREF1078_RS09540 0.44 -1.8 498,726 - HMPREF1078_RS09540 0.44 -0.4 498,727 + HMPREF1078_RS09540 0.44 +1.4 498,727 + HMPREF1078_RS09540 0.44 +0.5 498,728 - HMPREF1078_RS09540 0.44 -1.8 498,728 - HMPREF1078_RS09540 0.44 -0.3 498,927 + HMPREF1078_RS09540 0.53 -0.7 498,928 - HMPREF1078_RS09540 0.53 +0.9 498,948 + HMPREF1078_RS09540 0.54 -2.5 498,975 + HMPREF1078_RS09540 0.55 -0.2 498,982 + HMPREF1078_RS09540 0.55 -1.8 499,016 + HMPREF1078_RS09540 0.56 -1.0 499,017 - HMPREF1078_RS09540 0.57 +0.9 499,044 + HMPREF1078_RS09540 0.58 -0.3 499,157 + HMPREF1078_RS09540 0.62 +1.8 499,158 - HMPREF1078_RS09540 0.62 +1.5 499,160 - HMPREF1078_RS09540 0.63 +2.3 499,212 - HMPREF1078_RS09540 0.65 +1.5 499,241 + HMPREF1078_RS09540 0.66 -1.7 499,242 - HMPREF1078_RS09540 0.66 -0.6 499,268 + HMPREF1078_RS09540 0.67 +0.8 499,269 - HMPREF1078_RS09540 0.67 -0.8 499,270 + HMPREF1078_RS09540 0.67 +1.6 499,328 + HMPREF1078_RS09540 0.70 -1.5 499,328 + HMPREF1078_RS09540 0.70 -1.6 499,352 + HMPREF1078_RS09540 0.71 +0.3 499,393 + HMPREF1078_RS09540 0.72 +2.7 499,458 - HMPREF1078_RS09540 0.75 +0.7 499,458 - HMPREF1078_RS09540 0.75 -2.4 499,462 + HMPREF1078_RS09540 0.75 -1.0 499,604 + HMPREF1078_RS09540 0.81 +0.7 499,604 + HMPREF1078_RS09540 0.81 +0.3 499,605 - HMPREF1078_RS09540 0.81 -1.8 499,609 + HMPREF1078_RS09540 0.81 +0.2 499,679 + HMPREF1078_RS09540 0.84 +0.3 499,680 - HMPREF1078_RS09540 0.84 +1.5 499,697 + HMPREF1078_RS09540 0.85 +0.3 499,698 - HMPREF1078_RS09540 0.85 +1.1 499,698 - HMPREF1078_RS09540 0.85 -0.6 499,700 - HMPREF1078_RS09540 0.85 +2.2 499,711 + HMPREF1078_RS09540 0.86 +0.4 499,743 - HMPREF1078_RS09540 0.87 -0.5 499,759 + HMPREF1078_RS09540 0.88 -0.2 499,759 + HMPREF1078_RS09540 0.88 -1.5 499,759 + HMPREF1078_RS09540 0.88 +2.9 499,759 + HMPREF1078_RS09540 0.88 +0.5 499,838 - +1.4 499,862 + -2.5 499,865 - -2.7 499,865 - +0.1 499,873 + +0.9 499,910 + -1.3 499,916 - -0.3 499,930 + -0.4 499,998 - +0.6 500,048 + -3.0 500,052 + -2.0 500,053 - -2.1 500,100 - -1.8 500,100 - -2.1 500,137 + +1.7 500,215 + -0.8 500,248 + -2.9 500,352 - HMPREF1078_RS09545 0.11 -0.7 500,396 + HMPREF1078_RS09545 0.13 -1.3 500,399 - HMPREF1078_RS09545 0.13 -0.9 500,482 + HMPREF1078_RS09545 0.17 +1.8 500,482 + HMPREF1078_RS09545 0.17 +1.1 500,483 - HMPREF1078_RS09545 0.17 +1.8 500,483 - HMPREF1078_RS09545 0.17 -0.4 500,496 - HMPREF1078_RS09545 0.17 -1.3 500,501 + HMPREF1078_RS09545 0.18 +1.5 500,502 - HMPREF1078_RS09545 0.18 +0.5 500,504 - HMPREF1078_RS09545 0.18 -1.1 500,506 + HMPREF1078_RS09545 0.18 +1.8 500,538 + HMPREF1078_RS09545 0.19 -2.4 500,538 + HMPREF1078_RS09545 0.19 +1.4 500,539 - HMPREF1078_RS09545 0.19 +0.0 500,539 - HMPREF1078_RS09545 0.19 -2.2 500,570 + HMPREF1078_RS09545 0.21 -0.6 500,617 + HMPREF1078_RS09545 0.23 +0.3 500,617 + HMPREF1078_RS09545 0.23 -1.6 500,617 + HMPREF1078_RS09545 0.23 -0.5 500,617 + HMPREF1078_RS09545 0.23 +0.7 500,617 + HMPREF1078_RS09545 0.23 -0.7 500,618 - HMPREF1078_RS09545 0.23 -1.0 500,622 - HMPREF1078_RS09545 0.23 -1.1 500,622 - HMPREF1078_RS09545 0.23 -0.7 500,622 - HMPREF1078_RS09545 0.23 +0.7 500,672 + HMPREF1078_RS09545 0.25 -0.3 500,673 - HMPREF1078_RS09545 0.25 +0.0 500,686 - HMPREF1078_RS09545 0.26 -3.9 500,687 - HMPREF1078_RS09545 0.26 -3.0 500,687 - HMPREF1078_RS09545 0.26 -3.3 500,723 + HMPREF1078_RS09545 0.27 -0.5 500,736 + HMPREF1078_RS09545 0.28 +1.3 500,736 + HMPREF1078_RS09545 0.28 -0.5 500,736 + HMPREF1078_RS09545 0.28 -2.1 500,905 + HMPREF1078_RS09545 0.35 +0.1 500,906 - HMPREF1078_RS09545 0.35 +1.7 500,906 - HMPREF1078_RS09545 0.35 -1.5 500,910 - HMPREF1078_RS09545 0.35 -0.1 500,957 + HMPREF1078_RS09545 0.37 +0.7 500,958 - HMPREF1078_RS09545 0.37 -2.4 500,990 - HMPREF1078_RS09545 0.38 -0.1 500,990 - HMPREF1078_RS09545 0.38 -2.5 501,010 - HMPREF1078_RS09545 0.39 -1.5 501,047 + HMPREF1078_RS09545 0.41 -2.6
Or see this region's nucleotide sequence