Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08905 and HMPREF1078_RS08910 are separated by 77 nucleotides HMPREF1078_RS08910 and HMPREF1078_RS08915 are separated by 31 nucleotides HMPREF1078_RS08915 and HMPREF1078_RS08920 are separated by 201 nucleotides HMPREF1078_RS08920 and HMPREF1078_RS08925 are separated by 3 nucleotides HMPREF1078_RS08925 and HMPREF1078_RS08930 are separated by 20 nucleotides
HMPREF1078_RS08905: HMPREF1078_RS08905 - hypothetical protein, at 374,090 to 374,452
_RS08905
HMPREF1078_RS08910: HMPREF1078_RS08910 - helix-turn-helix domain-containing protein, at 374,530 to 374,835
_RS08910
HMPREF1078_RS08915: HMPREF1078_RS08915 - helix-turn-helix domain-containing protein, at 374,867 to 375,166
_RS08915
HMPREF1078_RS08920: HMPREF1078_RS08920 - helix-turn-helix domain-containing protein, at 375,368 to 375,730
_RS08920
HMPREF1078_RS08925: HMPREF1078_RS08925 - helix-turn-helix domain-containing protein, at 375,734 to 376,084
_RS08925
HMPREF1078_RS08930: HMPREF1078_RS08930 - DUF3945 domain-containing protein, at 376,105 to 377,676
_RS08930
Position (kb) 375
376 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 374.411 kb on + strand, within HMPREF1078_RS08905 at 374.412 kb on - strand, within HMPREF1078_RS08905 at 374.412 kb on - strand, within HMPREF1078_RS08905 at 374.412 kb on - strand, within HMPREF1078_RS08905 at 374.424 kb on + strand at 374.425 kb on - strand at 374.699 kb on + strand, within HMPREF1078_RS08910 at 374.836 kb on - strand at 374.858 kb on + strand at 374.858 kb on + strand at 374.858 kb on + strand at 374.883 kb on + strand at 374.934 kb on + strand, within HMPREF1078_RS08915 at 375.150 kb on - strand at 375.153 kb on - strand at 375.153 kb on - strand at 375.214 kb on - strand at 375.286 kb on - strand at 375.299 kb on - strand at 375.299 kb on - strand at 375.299 kb on - strand at 375.438 kb on - strand, within HMPREF1078_RS08920 at 375.646 kb on - strand, within HMPREF1078_RS08920 at 375.646 kb on - strand, within HMPREF1078_RS08920 at 375.729 kb on - strand at 375.729 kb on - strand at 375.975 kb on - strand, within HMPREF1078_RS08925 at 376.016 kb on - strand, within HMPREF1078_RS08925 at 376.040 kb on - strand, within HMPREF1078_RS08925 at 376.050 kb on - strand at 376.050 kb on - strand at 376.365 kb on - strand, within HMPREF1078_RS08930 at 376.685 kb on - strand, within HMPREF1078_RS08930
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 remove 374,411 + HMPREF1078_RS08905 0.88 +2.0 374,412 - HMPREF1078_RS08905 0.89 -0.6 374,412 - HMPREF1078_RS08905 0.89 -1.6 374,412 - HMPREF1078_RS08905 0.89 +0.5 374,424 + +2.7 374,425 - -0.5 374,699 + HMPREF1078_RS08910 0.55 -0.3 374,836 - +0.4 374,858 + -2.0 374,858 + -1.3 374,858 + -0.1 374,883 + -0.5 374,934 + HMPREF1078_RS08915 0.22 -2.0 375,150 - -1.2 375,153 - -1.1 375,153 - -1.1 375,214 - +0.3 375,286 - +0.0 375,299 - -0.5 375,299 - -2.9 375,299 - -1.2 375,438 - HMPREF1078_RS08920 0.19 -1.8 375,646 - HMPREF1078_RS08920 0.77 +1.5 375,646 - HMPREF1078_RS08920 0.77 +1.2 375,729 - +0.8 375,729 - -2.2 375,975 - HMPREF1078_RS08925 0.69 -2.1 376,016 - HMPREF1078_RS08925 0.80 +0.6 376,040 - HMPREF1078_RS08925 0.87 -0.4 376,050 - +0.1 376,050 - +0.8 376,365 - HMPREF1078_RS08930 0.17 +1.5 376,685 - HMPREF1078_RS08930 0.37 +1.3
Or see this region's nucleotide sequence