Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08105 and HMPREF1078_RS08110 are separated by 16 nucleotides HMPREF1078_RS08110 and HMPREF1078_RS08115 overlap by 4 nucleotides HMPREF1078_RS08115 and HMPREF1078_RS08120 are separated by 16 nucleotides
HMPREF1078_RS08105: HMPREF1078_RS08105 - ABC transporter substrate-binding protein, at 185,324 to 186,652
_RS08105
HMPREF1078_RS08110: HMPREF1078_RS08110 - ABC transporter permease, at 186,669 to 187,457
_RS08110
HMPREF1078_RS08115: HMPREF1078_RS08115 - ABC transporter permease, at 187,454 to 188,227
_RS08115
HMPREF1078_RS08120: HMPREF1078_RS08120 - polyamine ABC transporter ATP-binding protein, at 188,244 to 189,650
_RS08120
Position (kb) 187
188
189 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 186.459 kb on + strand, within HMPREF1078_RS08105 at 186.460 kb on - strand, within HMPREF1078_RS08105 at 186.534 kb on + strand at 186.534 kb on + strand at 186.535 kb on - strand at 186.583 kb on + strand at 186.583 kb on + strand at 186.738 kb on - strand at 186.790 kb on + strand, within HMPREF1078_RS08110 at 186.795 kb on - strand, within HMPREF1078_RS08110 at 186.795 kb on - strand, within HMPREF1078_RS08110 at 186.842 kb on + strand, within HMPREF1078_RS08110 at 186.869 kb on + strand, within HMPREF1078_RS08110 at 186.870 kb on - strand, within HMPREF1078_RS08110 at 186.880 kb on - strand, within HMPREF1078_RS08110 at 186.880 kb on - strand, within HMPREF1078_RS08110 at 186.882 kb on - strand, within HMPREF1078_RS08110 at 186.882 kb on - strand, within HMPREF1078_RS08110 at 186.974 kb on - strand, within HMPREF1078_RS08110 at 186.974 kb on - strand, within HMPREF1078_RS08110 at 187.024 kb on + strand, within HMPREF1078_RS08110 at 187.025 kb on - strand, within HMPREF1078_RS08110 at 187.025 kb on - strand, within HMPREF1078_RS08110 at 187.043 kb on + strand, within HMPREF1078_RS08110 at 187.044 kb on - strand, within HMPREF1078_RS08110 at 187.121 kb on + strand, within HMPREF1078_RS08110 at 187.124 kb on + strand, within HMPREF1078_RS08110 at 187.164 kb on + strand, within HMPREF1078_RS08110 at 187.212 kb on - strand, within HMPREF1078_RS08110 at 187.214 kb on + strand, within HMPREF1078_RS08110 at 187.317 kb on - strand, within HMPREF1078_RS08110 at 187.402 kb on + strand at 187.403 kb on - strand at 187.403 kb on - strand at 187.458 kb on - strand at 187.458 kb on - strand at 187.458 kb on - strand at 187.514 kb on - strand at 187.567 kb on + strand, within HMPREF1078_RS08115 at 187.568 kb on - strand, within HMPREF1078_RS08115 at 187.575 kb on + strand, within HMPREF1078_RS08115 at 187.575 kb on + strand, within HMPREF1078_RS08115 at 187.576 kb on - strand, within HMPREF1078_RS08115 at 187.615 kb on + strand, within HMPREF1078_RS08115 at 187.615 kb on + strand, within HMPREF1078_RS08115 at 187.616 kb on - strand, within HMPREF1078_RS08115 at 187.629 kb on - strand, within HMPREF1078_RS08115 at 187.834 kb on - strand, within HMPREF1078_RS08115 at 187.909 kb on + strand, within HMPREF1078_RS08115 at 187.995 kb on + strand, within HMPREF1078_RS08115 at 187.996 kb on - strand, within HMPREF1078_RS08115 at 187.996 kb on - strand, within HMPREF1078_RS08115 at 188.038 kb on + strand, within HMPREF1078_RS08115 at 188.041 kb on + strand, within HMPREF1078_RS08115 at 188.068 kb on + strand, within HMPREF1078_RS08115 at 188.069 kb on - strand, within HMPREF1078_RS08115 at 188.069 kb on - strand, within HMPREF1078_RS08115 at 188.069 kb on - strand, within HMPREF1078_RS08115 at 188.147 kb on + strand, within HMPREF1078_RS08115 at 188.148 kb on - strand, within HMPREF1078_RS08115 at 188.150 kb on + strand at 188.151 kb on - strand at 188.199 kb on + strand at 188.199 kb on + strand at 188.200 kb on - strand at 188.219 kb on - strand at 188.245 kb on + strand at 188.246 kb on - strand at 188.246 kb on - strand at 188.249 kb on + strand at 188.250 kb on - strand at 188.268 kb on - strand at 188.286 kb on + strand at 188.286 kb on - strand at 188.288 kb on + strand at 188.289 kb on - strand at 188.345 kb on + strand at 188.357 kb on + strand at 188.358 kb on - strand at 188.358 kb on - strand at 188.408 kb on - strand, within HMPREF1078_RS08120 at 188.547 kb on + strand, within HMPREF1078_RS08120 at 188.591 kb on + strand, within HMPREF1078_RS08120 at 188.591 kb on + strand, within HMPREF1078_RS08120 at 188.592 kb on - strand, within HMPREF1078_RS08120 at 188.600 kb on + strand, within HMPREF1078_RS08120 at 188.625 kb on - strand, within HMPREF1078_RS08120 at 188.678 kb on - strand, within HMPREF1078_RS08120 at 188.800 kb on + strand, within HMPREF1078_RS08120 at 188.800 kb on + strand, within HMPREF1078_RS08120 at 188.801 kb on - strand, within HMPREF1078_RS08120 at 188.975 kb on - strand, within HMPREF1078_RS08120 at 188.985 kb on - strand, within HMPREF1078_RS08120 at 189.033 kb on - strand, within HMPREF1078_RS08120 at 189.074 kb on - strand, within HMPREF1078_RS08120 at 189.074 kb on - strand, within HMPREF1078_RS08120 at 189.074 kb on - strand, within HMPREF1078_RS08120 at 189.074 kb on - strand, within HMPREF1078_RS08120 at 189.078 kb on - strand, within HMPREF1078_RS08120 at 189.099 kb on - strand, within HMPREF1078_RS08120 at 189.099 kb on - strand, within HMPREF1078_RS08120 at 189.197 kb on + strand, within HMPREF1078_RS08120 at 189.198 kb on - strand, within HMPREF1078_RS08120 at 189.198 kb on - strand, within HMPREF1078_RS08120
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 remove 186,459 + HMPREF1078_RS08105 0.85 -1.5 186,460 - HMPREF1078_RS08105 0.85 -4.1 186,534 + -1.3 186,534 + -1.5 186,535 - +1.5 186,583 + +1.8 186,583 + +2.5 186,738 - -1.1 186,790 + HMPREF1078_RS08110 0.15 -1.0 186,795 - HMPREF1078_RS08110 0.16 +0.6 186,795 - HMPREF1078_RS08110 0.16 -2.0 186,842 + HMPREF1078_RS08110 0.22 -0.7 186,869 + HMPREF1078_RS08110 0.25 +1.4 186,870 - HMPREF1078_RS08110 0.25 -0.8 186,880 - HMPREF1078_RS08110 0.27 +0.6 186,880 - HMPREF1078_RS08110 0.27 +0.1 186,882 - HMPREF1078_RS08110 0.27 -2.5 186,882 - HMPREF1078_RS08110 0.27 +2.0 186,974 - HMPREF1078_RS08110 0.39 +0.8 186,974 - HMPREF1078_RS08110 0.39 +1.2 187,024 + HMPREF1078_RS08110 0.45 +1.5 187,025 - HMPREF1078_RS08110 0.45 -1.1 187,025 - HMPREF1078_RS08110 0.45 -1.9 187,043 + HMPREF1078_RS08110 0.47 +0.6 187,044 - HMPREF1078_RS08110 0.48 -1.7 187,121 + HMPREF1078_RS08110 0.57 -0.2 187,124 + HMPREF1078_RS08110 0.58 -1.3 187,164 + HMPREF1078_RS08110 0.63 -2.0 187,212 - HMPREF1078_RS08110 0.69 +0.1 187,214 + HMPREF1078_RS08110 0.69 -0.8 187,317 - HMPREF1078_RS08110 0.82 -1.3 187,402 + +0.7 187,403 - -0.5 187,403 - -1.4 187,458 - +1.0 187,458 - -0.4 187,458 - -2.7 187,514 - -0.3 187,567 + HMPREF1078_RS08115 0.15 -0.1 187,568 - HMPREF1078_RS08115 0.15 -0.2 187,575 + HMPREF1078_RS08115 0.16 -0.5 187,575 + HMPREF1078_RS08115 0.16 -0.4 187,576 - HMPREF1078_RS08115 0.16 -0.4 187,615 + HMPREF1078_RS08115 0.21 +1.4 187,615 + HMPREF1078_RS08115 0.21 -1.7 187,616 - HMPREF1078_RS08115 0.21 -1.9 187,629 - HMPREF1078_RS08115 0.23 -3.0 187,834 - HMPREF1078_RS08115 0.49 -0.6 187,909 + HMPREF1078_RS08115 0.59 -0.1 187,995 + HMPREF1078_RS08115 0.70 +0.1 187,996 - HMPREF1078_RS08115 0.70 -0.1 187,996 - HMPREF1078_RS08115 0.70 -0.0 188,038 + HMPREF1078_RS08115 0.75 -0.1 188,041 + HMPREF1078_RS08115 0.76 -3.2 188,068 + HMPREF1078_RS08115 0.79 -1.9 188,069 - HMPREF1078_RS08115 0.79 -0.3 188,069 - HMPREF1078_RS08115 0.79 -1.7 188,069 - HMPREF1078_RS08115 0.79 -1.2 188,147 + HMPREF1078_RS08115 0.90 +4.5 188,148 - HMPREF1078_RS08115 0.90 -0.1 188,150 + -0.8 188,151 - +0.9 188,199 + +0.1 188,199 + +0.8 188,200 - -1.6 188,219 - -1.4 188,245 + +0.3 188,246 - -0.5 188,246 - +0.6 188,249 + -1.5 188,250 - +0.8 188,268 - -1.1 188,286 + +1.6 188,286 - -0.6 188,288 + -0.4 188,289 - -1.3 188,345 + +0.2 188,357 + +1.0 188,358 - -0.6 188,358 - +0.4 188,408 - HMPREF1078_RS08120 0.12 -1.6 188,547 + HMPREF1078_RS08120 0.22 +0.1 188,591 + HMPREF1078_RS08120 0.25 -2.8 188,591 + HMPREF1078_RS08120 0.25 -0.4 188,592 - HMPREF1078_RS08120 0.25 -1.5 188,600 + HMPREF1078_RS08120 0.25 -1.6 188,625 - HMPREF1078_RS08120 0.27 +0.2 188,678 - HMPREF1078_RS08120 0.31 +1.2 188,800 + HMPREF1078_RS08120 0.40 -1.7 188,800 + HMPREF1078_RS08120 0.40 +0.5 188,801 - HMPREF1078_RS08120 0.40 -2.8 188,975 - HMPREF1078_RS08120 0.52 -2.6 188,985 - HMPREF1078_RS08120 0.53 +0.6 189,033 - HMPREF1078_RS08120 0.56 -0.9 189,074 - HMPREF1078_RS08120 0.59 -1.3 189,074 - HMPREF1078_RS08120 0.59 -0.2 189,074 - HMPREF1078_RS08120 0.59 +0.2 189,074 - HMPREF1078_RS08120 0.59 +0.3 189,078 - HMPREF1078_RS08120 0.59 +1.5 189,099 - HMPREF1078_RS08120 0.61 -2.6 189,099 - HMPREF1078_RS08120 0.61 +1.2 189,197 + HMPREF1078_RS08120 0.68 +0.6 189,198 - HMPREF1078_RS08120 0.68 +1.1 189,198 - HMPREF1078_RS08120 0.68 +0.7
Or see this region's nucleotide sequence