Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08035 and HMPREF1078_RS08040 are separated by 268 nucleotides HMPREF1078_RS08040 and HMPREF1078_RS08045 are separated by 10 nucleotides
HMPREF1078_RS08035: HMPREF1078_RS08035 - magnesium transporter CorA family protein, at 169,442 to 170,368
_RS08035
HMPREF1078_RS08040: HMPREF1078_RS08040 - winged helix DNA-binding domain-containing protein, at 170,637 to 171,707
_RS08040
HMPREF1078_RS08045: HMPREF1078_RS08045 - L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha, at 171,718 to 173,010
_RS08045
Position (kb) 170
171
172 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 169.711 kb on + strand, within HMPREF1078_RS08035 at 169.711 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.735 kb on - strand, within HMPREF1078_RS08035 at 169.735 kb on - strand, within HMPREF1078_RS08035 at 169.735 kb on - strand, within HMPREF1078_RS08035 at 169.749 kb on - strand, within HMPREF1078_RS08035 at 169.817 kb on + strand, within HMPREF1078_RS08035 at 169.817 kb on + strand, within HMPREF1078_RS08035 at 169.817 kb on + strand, within HMPREF1078_RS08035 at 169.999 kb on + strand, within HMPREF1078_RS08035 at 170.048 kb on + strand, within HMPREF1078_RS08035 at 170.051 kb on - strand, within HMPREF1078_RS08035 at 170.088 kb on + strand, within HMPREF1078_RS08035 at 170.088 kb on + strand, within HMPREF1078_RS08035 at 170.117 kb on + strand, within HMPREF1078_RS08035 at 170.117 kb on + strand, within HMPREF1078_RS08035 at 170.118 kb on - strand, within HMPREF1078_RS08035 at 170.118 kb on - strand, within HMPREF1078_RS08035 at 170.246 kb on + strand, within HMPREF1078_RS08035 at 170.246 kb on + strand, within HMPREF1078_RS08035 at 170.247 kb on - strand, within HMPREF1078_RS08035 at 170.247 kb on - strand, within HMPREF1078_RS08035 at 170.251 kb on + strand, within HMPREF1078_RS08035 at 170.268 kb on - strand, within HMPREF1078_RS08035 at 170.322 kb on + strand at 170.322 kb on + strand at 170.322 kb on + strand at 170.372 kb on - strand at 170.437 kb on - strand at 170.437 kb on - strand at 170.437 kb on - strand at 170.440 kb on + strand at 170.468 kb on + strand at 170.468 kb on + strand at 170.469 kb on - strand at 170.471 kb on + strand at 170.471 kb on + strand at 170.472 kb on - strand at 170.472 kb on - strand at 170.472 kb on - strand at 170.489 kb on - strand at 170.493 kb on - strand at 170.513 kb on + strand at 170.528 kb on - strand at 170.550 kb on + strand at 170.569 kb on + strand at 170.574 kb on - strand at 170.574 kb on - strand at 170.575 kb on + strand at 170.577 kb on - strand at 170.579 kb on + strand at 170.579 kb on - strand at 170.623 kb on + strand at 170.803 kb on + strand, within HMPREF1078_RS08040 at 170.804 kb on - strand, within HMPREF1078_RS08040 at 170.835 kb on - strand, within HMPREF1078_RS08040 at 170.835 kb on - strand, within HMPREF1078_RS08040 at 170.835 kb on - strand, within HMPREF1078_RS08040 at 170.887 kb on + strand, within HMPREF1078_RS08040 at 170.888 kb on - strand, within HMPREF1078_RS08040 at 170.888 kb on - strand, within HMPREF1078_RS08040 at 170.899 kb on + strand, within HMPREF1078_RS08040 at 170.900 kb on - strand, within HMPREF1078_RS08040 at 170.908 kb on + strand, within HMPREF1078_RS08040 at 170.909 kb on - strand, within HMPREF1078_RS08040 at 170.972 kb on - strand, within HMPREF1078_RS08040 at 171.081 kb on - strand, within HMPREF1078_RS08040 at 171.108 kb on + strand, within HMPREF1078_RS08040 at 171.184 kb on + strand, within HMPREF1078_RS08040 at 171.184 kb on + strand, within HMPREF1078_RS08040 at 171.185 kb on - strand, within HMPREF1078_RS08040 at 171.185 kb on - strand, within HMPREF1078_RS08040 at 171.185 kb on - strand, within HMPREF1078_RS08040 at 171.204 kb on - strand, within HMPREF1078_RS08040 at 171.204 kb on - strand, within HMPREF1078_RS08040 at 171.208 kb on - strand, within HMPREF1078_RS08040 at 171.253 kb on + strand, within HMPREF1078_RS08040 at 171.254 kb on - strand, within HMPREF1078_RS08040 at 171.259 kb on - strand, within HMPREF1078_RS08040 at 171.359 kb on + strand, within HMPREF1078_RS08040 at 171.360 kb on - strand, within HMPREF1078_RS08040 at 171.504 kb on + strand, within HMPREF1078_RS08040 at 171.504 kb on + strand, within HMPREF1078_RS08040 at 171.504 kb on + strand, within HMPREF1078_RS08040 at 171.504 kb on + strand, within HMPREF1078_RS08040 at 171.505 kb on - strand, within HMPREF1078_RS08040 at 171.506 kb on + strand, within HMPREF1078_RS08040 at 171.507 kb on - strand, within HMPREF1078_RS08040 at 171.507 kb on - strand, within HMPREF1078_RS08040 at 171.602 kb on + strand at 171.602 kb on + strand at 171.602 kb on + strand at 171.602 kb on + strand at 171.602 kb on + strand at 171.603 kb on - strand at 171.603 kb on - strand at 171.603 kb on - strand at 171.603 kb on - strand at 171.605 kb on - strand at 171.707 kb on + strand at 171.707 kb on + strand at 171.707 kb on + strand at 171.707 kb on + strand at 171.708 kb on - strand at 171.738 kb on + strand at 171.787 kb on - strand at 171.885 kb on + strand, within HMPREF1078_RS08045 at 171.885 kb on + strand, within HMPREF1078_RS08045 at 171.944 kb on - strand, within HMPREF1078_RS08045 at 171.944 kb on - strand, within HMPREF1078_RS08045 at 171.944 kb on - strand, within HMPREF1078_RS08045 at 171.944 kb on - strand, within HMPREF1078_RS08045 at 171.944 kb on - strand, within HMPREF1078_RS08045 at 171.958 kb on - strand, within HMPREF1078_RS08045 at 172.016 kb on + strand, within HMPREF1078_RS08045 at 172.017 kb on - strand, within HMPREF1078_RS08045 at 172.017 kb on - strand, within HMPREF1078_RS08045 at 172.020 kb on + strand, within HMPREF1078_RS08045 at 172.020 kb on + strand, within HMPREF1078_RS08045 at 172.097 kb on + strand, within HMPREF1078_RS08045 at 172.098 kb on - strand, within HMPREF1078_RS08045 at 172.293 kb on + strand, within HMPREF1078_RS08045 at 172.294 kb on - strand, within HMPREF1078_RS08045 at 172.296 kb on - strand, within HMPREF1078_RS08045 at 172.296 kb on - strand, within HMPREF1078_RS08045 at 172.313 kb on + strand, within HMPREF1078_RS08045 at 172.313 kb on + strand, within HMPREF1078_RS08045 at 172.314 kb on - strand, within HMPREF1078_RS08045 at 172.314 kb on - strand, within HMPREF1078_RS08045 at 172.314 kb on - strand, within HMPREF1078_RS08045 at 172.326 kb on - strand, within HMPREF1078_RS08045 at 172.326 kb on - strand, within HMPREF1078_RS08045 at 172.353 kb on + strand, within HMPREF1078_RS08045 at 172.354 kb on - strand, within HMPREF1078_RS08045 at 172.354 kb on - strand, within HMPREF1078_RS08045 at 172.354 kb on - strand, within HMPREF1078_RS08045 at 172.354 kb on - strand, within HMPREF1078_RS08045 at 172.461 kb on - strand, within HMPREF1078_RS08045 at 172.468 kb on - strand, within HMPREF1078_RS08045 at 172.468 kb on - strand, within HMPREF1078_RS08045 at 172.640 kb on + strand, within HMPREF1078_RS08045 at 172.640 kb on + strand, within HMPREF1078_RS08045 at 172.641 kb on - strand, within HMPREF1078_RS08045 at 172.664 kb on - strand, within HMPREF1078_RS08045 at 172.684 kb on - strand, within HMPREF1078_RS08045
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 remove 169,711 + HMPREF1078_RS08035 0.29 -0.0 169,711 + HMPREF1078_RS08035 0.29 -2.8 169,734 + HMPREF1078_RS08035 0.31 +1.5 169,734 + HMPREF1078_RS08035 0.31 -1.6 169,734 + HMPREF1078_RS08035 0.31 -0.7 169,734 + HMPREF1078_RS08035 0.31 +1.5 169,734 + HMPREF1078_RS08035 0.31 -0.3 169,734 + HMPREF1078_RS08035 0.31 +1.1 169,734 + HMPREF1078_RS08035 0.31 -1.3 169,735 - HMPREF1078_RS08035 0.32 -0.1 169,735 - HMPREF1078_RS08035 0.32 -1.1 169,735 - HMPREF1078_RS08035 0.32 +1.6 169,749 - HMPREF1078_RS08035 0.33 -1.9 169,817 + HMPREF1078_RS08035 0.40 -0.4 169,817 + HMPREF1078_RS08035 0.40 -0.9 169,817 + HMPREF1078_RS08035 0.40 -0.3 169,999 + HMPREF1078_RS08035 0.60 -0.8 170,048 + HMPREF1078_RS08035 0.65 -0.1 170,051 - HMPREF1078_RS08035 0.66 +3.1 170,088 + HMPREF1078_RS08035 0.70 +1.1 170,088 + HMPREF1078_RS08035 0.70 -1.0 170,117 + HMPREF1078_RS08035 0.73 -0.5 170,117 + HMPREF1078_RS08035 0.73 +0.3 170,118 - HMPREF1078_RS08035 0.73 -0.1 170,118 - HMPREF1078_RS08035 0.73 -0.1 170,246 + HMPREF1078_RS08035 0.87 +0.6 170,246 + HMPREF1078_RS08035 0.87 +1.3 170,247 - HMPREF1078_RS08035 0.87 -4.7 170,247 - HMPREF1078_RS08035 0.87 +0.5 170,251 + HMPREF1078_RS08035 0.87 -1.1 170,268 - HMPREF1078_RS08035 0.89 -1.4 170,322 + +1.9 170,322 + -1.5 170,322 + +0.5 170,372 - -1.4 170,437 - +1.1 170,437 - -2.0 170,437 - -3.9 170,440 + -0.8 170,468 + -0.9 170,468 + -1.2 170,469 - +1.7 170,471 + +0.9 170,471 + +0.6 170,472 - -0.4 170,472 - +0.4 170,472 - +2.2 170,489 - +0.3 170,493 - +1.2 170,513 + -3.6 170,528 - -1.3 170,550 + -1.5 170,569 + +2.5 170,574 - +0.2 170,574 - +0.3 170,575 + -1.7 170,577 - -0.7 170,579 + +0.5 170,579 - +1.2 170,623 + -0.1 170,803 + HMPREF1078_RS08040 0.15 +1.7 170,804 - HMPREF1078_RS08040 0.16 +1.3 170,835 - HMPREF1078_RS08040 0.18 -1.1 170,835 - HMPREF1078_RS08040 0.18 -0.5 170,835 - HMPREF1078_RS08040 0.18 -1.2 170,887 + HMPREF1078_RS08040 0.23 +1.5 170,888 - HMPREF1078_RS08040 0.23 +0.1 170,888 - HMPREF1078_RS08040 0.23 -1.2 170,899 + HMPREF1078_RS08040 0.24 -1.1 170,900 - HMPREF1078_RS08040 0.25 -1.9 170,908 + HMPREF1078_RS08040 0.25 -0.5 170,909 - HMPREF1078_RS08040 0.25 +0.2 170,972 - HMPREF1078_RS08040 0.31 -3.2 171,081 - HMPREF1078_RS08040 0.41 -0.1 171,108 + HMPREF1078_RS08040 0.44 -2.3 171,184 + HMPREF1078_RS08040 0.51 +1.5 171,184 + HMPREF1078_RS08040 0.51 -1.4 171,185 - HMPREF1078_RS08040 0.51 +1.7 171,185 - HMPREF1078_RS08040 0.51 +0.4 171,185 - HMPREF1078_RS08040 0.51 -0.4 171,204 - HMPREF1078_RS08040 0.53 -0.4 171,204 - HMPREF1078_RS08040 0.53 -1.2 171,208 - HMPREF1078_RS08040 0.53 +0.2 171,253 + HMPREF1078_RS08040 0.58 +0.5 171,254 - HMPREF1078_RS08040 0.58 -2.3 171,259 - HMPREF1078_RS08040 0.58 -2.2 171,359 + HMPREF1078_RS08040 0.67 +0.7 171,360 - HMPREF1078_RS08040 0.68 +1.1 171,504 + HMPREF1078_RS08040 0.81 +0.2 171,504 + HMPREF1078_RS08040 0.81 +2.1 171,504 + HMPREF1078_RS08040 0.81 +0.5 171,504 + HMPREF1078_RS08040 0.81 -1.8 171,505 - HMPREF1078_RS08040 0.81 -0.3 171,506 + HMPREF1078_RS08040 0.81 -0.2 171,507 - HMPREF1078_RS08040 0.81 +0.6 171,507 - HMPREF1078_RS08040 0.81 +2.2 171,602 + -0.7 171,602 + +0.3 171,602 + -0.3 171,602 + -1.6 171,602 + -0.0 171,603 - -0.1 171,603 - +1.4 171,603 - +1.6 171,603 - +1.8 171,605 - +1.0 171,707 + -0.5 171,707 + +1.7 171,707 + +1.2 171,707 + -0.7 171,708 - -2.7 171,738 + -1.6 171,787 - +0.5 171,885 + HMPREF1078_RS08045 0.13 -1.1 171,885 + HMPREF1078_RS08045 0.13 -0.5 171,944 - HMPREF1078_RS08045 0.17 -0.6 171,944 - HMPREF1078_RS08045 0.17 -0.3 171,944 - HMPREF1078_RS08045 0.17 +0.8 171,944 - HMPREF1078_RS08045 0.17 +0.2 171,944 - HMPREF1078_RS08045 0.17 +0.1 171,958 - HMPREF1078_RS08045 0.19 -0.3 172,016 + HMPREF1078_RS08045 0.23 -2.2 172,017 - HMPREF1078_RS08045 0.23 -2.4 172,017 - HMPREF1078_RS08045 0.23 -3.9 172,020 + HMPREF1078_RS08045 0.23 -0.8 172,020 + HMPREF1078_RS08045 0.23 -0.1 172,097 + HMPREF1078_RS08045 0.29 +1.6 172,098 - HMPREF1078_RS08045 0.29 +0.3 172,293 + HMPREF1078_RS08045 0.44 -2.3 172,294 - HMPREF1078_RS08045 0.45 +1.1 172,296 - HMPREF1078_RS08045 0.45 +0.2 172,296 - HMPREF1078_RS08045 0.45 +0.9 172,313 + HMPREF1078_RS08045 0.46 -1.7 172,313 + HMPREF1078_RS08045 0.46 +0.9 172,314 - HMPREF1078_RS08045 0.46 -1.9 172,314 - HMPREF1078_RS08045 0.46 +0.2 172,314 - HMPREF1078_RS08045 0.46 +1.1 172,326 - HMPREF1078_RS08045 0.47 -1.7 172,326 - HMPREF1078_RS08045 0.47 +0.3 172,353 + HMPREF1078_RS08045 0.49 -0.9 172,354 - HMPREF1078_RS08045 0.49 -1.1 172,354 - HMPREF1078_RS08045 0.49 +0.1 172,354 - HMPREF1078_RS08045 0.49 +0.6 172,354 - HMPREF1078_RS08045 0.49 -0.9 172,461 - HMPREF1078_RS08045 0.57 -0.8 172,468 - HMPREF1078_RS08045 0.58 -0.8 172,468 - HMPREF1078_RS08045 0.58 -2.9 172,640 + HMPREF1078_RS08045 0.71 -1.1 172,640 + HMPREF1078_RS08045 0.71 -1.7 172,641 - HMPREF1078_RS08045 0.71 +0.1 172,664 - HMPREF1078_RS08045 0.73 +2.6 172,684 - HMPREF1078_RS08045 0.75 -0.4
Or see this region's nucleotide sequence