Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06915 and HMPREF1078_RS06920 are separated by 137 nucleotides HMPREF1078_RS06920 and HMPREF1078_RS06925 are separated by 100 nucleotides
HMPREF1078_RS06915: HMPREF1078_RS06915 - head GIN domain-containing protein, at 788,131 to 788,940
_RS06915
HMPREF1078_RS06920: HMPREF1078_RS06920 - PmoA family protein, at 789,078 to 790,139
_RS06920
HMPREF1078_RS06925: HMPREF1078_RS06925 - Gfo/Idh/MocA family oxidoreductase, at 790,240 to 791,628
_RS06925
Position (kb) 789
790
791 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 788.110 kb on - strand at 788.130 kb on - strand at 788.173 kb on + strand at 788.174 kb on - strand at 788.174 kb on - strand at 788.192 kb on + strand at 788.197 kb on + strand at 788.197 kb on + strand at 788.198 kb on - strand at 788.198 kb on - strand at 788.198 kb on - strand at 788.198 kb on - strand at 788.198 kb on - strand at 788.198 kb on - strand at 788.198 kb on - strand at 788.199 kb on + strand at 788.200 kb on - strand at 788.218 kb on - strand, within HMPREF1078_RS06915 at 788.245 kb on + strand, within HMPREF1078_RS06915 at 788.246 kb on - strand, within HMPREF1078_RS06915 at 788.313 kb on + strand, within HMPREF1078_RS06915 at 788.391 kb on + strand, within HMPREF1078_RS06915 at 788.391 kb on + strand, within HMPREF1078_RS06915 at 788.392 kb on - strand, within HMPREF1078_RS06915 at 788.407 kb on + strand, within HMPREF1078_RS06915 at 788.408 kb on - strand, within HMPREF1078_RS06915 at 788.430 kb on + strand, within HMPREF1078_RS06915 at 788.431 kb on - strand, within HMPREF1078_RS06915 at 788.511 kb on + strand, within HMPREF1078_RS06915 at 788.511 kb on + strand, within HMPREF1078_RS06915 at 788.517 kb on + strand, within HMPREF1078_RS06915 at 788.570 kb on - strand, within HMPREF1078_RS06915 at 788.578 kb on + strand, within HMPREF1078_RS06915 at 788.578 kb on + strand, within HMPREF1078_RS06915 at 788.578 kb on + strand, within HMPREF1078_RS06915 at 788.617 kb on + strand, within HMPREF1078_RS06915 at 788.683 kb on + strand, within HMPREF1078_RS06915 at 788.683 kb on + strand, within HMPREF1078_RS06915 at 788.683 kb on + strand, within HMPREF1078_RS06915 at 788.684 kb on - strand, within HMPREF1078_RS06915 at 788.704 kb on + strand, within HMPREF1078_RS06915 at 788.704 kb on + strand, within HMPREF1078_RS06915 at 788.705 kb on - strand, within HMPREF1078_RS06915 at 788.710 kb on + strand, within HMPREF1078_RS06915 at 788.727 kb on + strand, within HMPREF1078_RS06915 at 788.728 kb on + strand, within HMPREF1078_RS06915 at 788.728 kb on + strand, within HMPREF1078_RS06915 at 788.728 kb on + strand, within HMPREF1078_RS06915 at 788.728 kb on + strand, within HMPREF1078_RS06915 at 788.728 kb on + strand, within HMPREF1078_RS06915 at 788.729 kb on - strand, within HMPREF1078_RS06915 at 788.729 kb on - strand, within HMPREF1078_RS06915 at 788.729 kb on - strand, within HMPREF1078_RS06915 at 788.729 kb on - strand, within HMPREF1078_RS06915 at 788.741 kb on - strand, within HMPREF1078_RS06915 at 788.751 kb on + strand, within HMPREF1078_RS06915 at 788.791 kb on + strand, within HMPREF1078_RS06915 at 788.792 kb on - strand, within HMPREF1078_RS06915 at 788.800 kb on + strand, within HMPREF1078_RS06915 at 788.800 kb on + strand, within HMPREF1078_RS06915 at 788.800 kb on + strand, within HMPREF1078_RS06915 at 788.804 kb on + strand, within HMPREF1078_RS06915 at 788.804 kb on + strand, within HMPREF1078_RS06915 at 788.805 kb on - strand, within HMPREF1078_RS06915 at 788.805 kb on - strand, within HMPREF1078_RS06915 at 788.805 kb on - strand, within HMPREF1078_RS06915 at 788.866 kb on + strand at 788.867 kb on - strand at 788.871 kb on + strand at 788.907 kb on + strand at 788.908 kb on - strand at 788.908 kb on - strand at 788.917 kb on - strand at 788.989 kb on - strand at 788.991 kb on + strand at 788.992 kb on - strand at 788.992 kb on - strand at 788.992 kb on - strand at 789.101 kb on - strand at 789.101 kb on - strand at 789.101 kb on - strand at 789.120 kb on - strand at 789.120 kb on - strand at 789.123 kb on - strand at 789.123 kb on - strand at 789.123 kb on - strand at 789.126 kb on - strand at 789.126 kb on - strand at 789.195 kb on + strand, within HMPREF1078_RS06920 at 789.199 kb on - strand, within HMPREF1078_RS06920 at 789.213 kb on + strand, within HMPREF1078_RS06920 at 789.232 kb on + strand, within HMPREF1078_RS06920 at 789.232 kb on + strand, within HMPREF1078_RS06920 at 789.233 kb on - strand, within HMPREF1078_RS06920 at 789.233 kb on - strand, within HMPREF1078_RS06920 at 789.341 kb on + strand, within HMPREF1078_RS06920 at 789.341 kb on + strand, within HMPREF1078_RS06920 at 789.341 kb on + strand, within HMPREF1078_RS06920 at 789.341 kb on + strand, within HMPREF1078_RS06920 at 789.342 kb on - strand, within HMPREF1078_RS06920 at 789.344 kb on + strand, within HMPREF1078_RS06920 at 789.344 kb on + strand, within HMPREF1078_RS06920 at 789.345 kb on - strand, within HMPREF1078_RS06920 at 789.362 kb on - strand, within HMPREF1078_RS06920 at 789.411 kb on + strand, within HMPREF1078_RS06920 at 789.411 kb on + strand, within HMPREF1078_RS06920 at 789.412 kb on - strand, within HMPREF1078_RS06920 at 789.420 kb on + strand, within HMPREF1078_RS06920 at 789.421 kb on - strand, within HMPREF1078_RS06920 at 789.498 kb on - strand, within HMPREF1078_RS06920 at 789.509 kb on + strand, within HMPREF1078_RS06920 at 789.517 kb on + strand, within HMPREF1078_RS06920 at 789.621 kb on - strand, within HMPREF1078_RS06920 at 789.653 kb on + strand, within HMPREF1078_RS06920 at 789.668 kb on - strand, within HMPREF1078_RS06920 at 789.668 kb on - strand, within HMPREF1078_RS06920 at 789.688 kb on - strand, within HMPREF1078_RS06920 at 789.688 kb on - strand, within HMPREF1078_RS06920 at 789.688 kb on - strand, within HMPREF1078_RS06920 at 789.692 kb on + strand, within HMPREF1078_RS06920 at 789.864 kb on + strand, within HMPREF1078_RS06920 at 789.864 kb on + strand, within HMPREF1078_RS06920 at 789.951 kb on - strand, within HMPREF1078_RS06920 at 789.952 kb on + strand, within HMPREF1078_RS06920 at 789.952 kb on + strand, within HMPREF1078_RS06920 at 789.952 kb on + strand, within HMPREF1078_RS06920 at 789.953 kb on - strand, within HMPREF1078_RS06920 at 789.953 kb on - strand, within HMPREF1078_RS06920 at 789.953 kb on - strand, within HMPREF1078_RS06920 at 789.953 kb on - strand, within HMPREF1078_RS06920 at 789.956 kb on + strand, within HMPREF1078_RS06920 at 789.957 kb on - strand, within HMPREF1078_RS06920 at 789.957 kb on - strand, within HMPREF1078_RS06920 at 789.974 kb on + strand, within HMPREF1078_RS06920 at 789.975 kb on - strand, within HMPREF1078_RS06920 at 789.976 kb on + strand, within HMPREF1078_RS06920 at 789.977 kb on - strand, within HMPREF1078_RS06920 at 789.977 kb on - strand, within HMPREF1078_RS06920 at 789.977 kb on - strand, within HMPREF1078_RS06920 at 789.977 kb on - strand, within HMPREF1078_RS06920 at 790.020 kb on + strand, within HMPREF1078_RS06920 at 790.020 kb on + strand, within HMPREF1078_RS06920 at 790.020 kb on + strand, within HMPREF1078_RS06920 at 790.020 kb on + strand, within HMPREF1078_RS06920 at 790.021 kb on - strand, within HMPREF1078_RS06920 at 790.021 kb on - strand, within HMPREF1078_RS06920 at 790.024 kb on + strand, within HMPREF1078_RS06920 at 790.024 kb on + strand, within HMPREF1078_RS06920 at 790.025 kb on - strand, within HMPREF1078_RS06920 at 790.025 kb on - strand, within HMPREF1078_RS06920 at 790.026 kb on + strand, within HMPREF1078_RS06920 at 790.058 kb on + strand at 790.066 kb on - strand at 790.066 kb on - strand at 790.066 kb on - strand at 790.099 kb on + strand at 790.123 kb on - strand at 790.177 kb on + strand at 790.178 kb on - strand at 790.183 kb on + strand at 790.184 kb on - strand at 790.244 kb on - strand at 790.244 kb on - strand at 790.248 kb on + strand at 790.248 kb on + strand at 790.248 kb on + strand at 790.248 kb on + strand at 790.248 kb on + strand at 790.248 kb on + strand at 790.249 kb on - strand at 790.249 kb on - strand at 790.249 kb on - strand at 790.255 kb on - strand at 790.256 kb on + strand at 790.256 kb on + strand at 790.257 kb on - strand at 790.288 kb on + strand at 790.303 kb on + strand at 790.321 kb on + strand at 790.321 kb on + strand at 790.321 kb on + strand at 790.321 kb on + strand at 790.321 kb on + strand at 790.321 kb on + strand at 790.321 kb on + strand at 790.322 kb on - strand at 790.322 kb on - strand at 790.323 kb on + strand at 790.323 kb on + strand at 790.323 kb on + strand at 790.323 kb on + strand at 790.418 kb on - strand, within HMPREF1078_RS06925 at 790.524 kb on - strand, within HMPREF1078_RS06925 at 790.619 kb on + strand, within HMPREF1078_RS06925 at 790.619 kb on + strand, within HMPREF1078_RS06925 at 790.620 kb on - strand, within HMPREF1078_RS06925 at 790.635 kb on - strand, within HMPREF1078_RS06925 at 790.639 kb on + strand, within HMPREF1078_RS06925 at 790.646 kb on - strand, within HMPREF1078_RS06925 at 790.767 kb on - strand, within HMPREF1078_RS06925 at 790.824 kb on + strand, within HMPREF1078_RS06925 at 790.824 kb on + strand, within HMPREF1078_RS06925 at 790.824 kb on + strand, within HMPREF1078_RS06925 at 790.824 kb on + strand, within HMPREF1078_RS06925 at 790.843 kb on + strand, within HMPREF1078_RS06925 at 791.028 kb on - strand, within HMPREF1078_RS06925 at 791.052 kb on + strand, within HMPREF1078_RS06925 at 791.086 kb on + strand, within HMPREF1078_RS06925
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 remove 788,110 - -0.3 788,130 - +1.0 788,173 + -0.7 788,174 - +1.5 788,174 - -0.7 788,192 + -2.3 788,197 + +0.1 788,197 + -3.4 788,198 - +0.2 788,198 - -0.9 788,198 - -0.8 788,198 - -0.1 788,198 - +0.1 788,198 - +1.7 788,198 - +1.1 788,199 + +1.1 788,200 - +0.1 788,218 - HMPREF1078_RS06915 0.11 -2.0 788,245 + HMPREF1078_RS06915 0.14 -1.1 788,246 - HMPREF1078_RS06915 0.14 -1.1 788,313 + HMPREF1078_RS06915 0.22 +0.5 788,391 + HMPREF1078_RS06915 0.32 +0.4 788,391 + HMPREF1078_RS06915 0.32 -0.2 788,392 - HMPREF1078_RS06915 0.32 +0.3 788,407 + HMPREF1078_RS06915 0.34 +0.6 788,408 - HMPREF1078_RS06915 0.34 -0.7 788,430 + HMPREF1078_RS06915 0.37 +2.1 788,431 - HMPREF1078_RS06915 0.37 +1.1 788,511 + HMPREF1078_RS06915 0.47 -1.4 788,511 + HMPREF1078_RS06915 0.47 -2.2 788,517 + HMPREF1078_RS06915 0.48 +0.9 788,570 - HMPREF1078_RS06915 0.54 -1.1 788,578 + HMPREF1078_RS06915 0.55 +2.3 788,578 + HMPREF1078_RS06915 0.55 -2.0 788,578 + HMPREF1078_RS06915 0.55 +0.1 788,617 + HMPREF1078_RS06915 0.60 -0.3 788,683 + HMPREF1078_RS06915 0.68 +1.0 788,683 + HMPREF1078_RS06915 0.68 +0.5 788,683 + HMPREF1078_RS06915 0.68 +0.9 788,684 - HMPREF1078_RS06915 0.68 +0.1 788,704 + HMPREF1078_RS06915 0.71 +0.5 788,704 + HMPREF1078_RS06915 0.71 +0.1 788,705 - HMPREF1078_RS06915 0.71 +2.0 788,710 + HMPREF1078_RS06915 0.71 +0.9 788,727 + HMPREF1078_RS06915 0.74 +1.1 788,728 + HMPREF1078_RS06915 0.74 -1.1 788,728 + HMPREF1078_RS06915 0.74 -1.8 788,728 + HMPREF1078_RS06915 0.74 -0.1 788,728 + HMPREF1078_RS06915 0.74 +0.1 788,728 + HMPREF1078_RS06915 0.74 -0.2 788,729 - HMPREF1078_RS06915 0.74 -0.3 788,729 - HMPREF1078_RS06915 0.74 -0.8 788,729 - HMPREF1078_RS06915 0.74 +2.6 788,729 - HMPREF1078_RS06915 0.74 -0.4 788,741 - HMPREF1078_RS06915 0.75 -2.8 788,751 + HMPREF1078_RS06915 0.77 +1.6 788,791 + HMPREF1078_RS06915 0.81 +0.9 788,792 - HMPREF1078_RS06915 0.82 +0.6 788,800 + HMPREF1078_RS06915 0.83 +0.3 788,800 + HMPREF1078_RS06915 0.83 -0.1 788,800 + HMPREF1078_RS06915 0.83 +0.8 788,804 + HMPREF1078_RS06915 0.83 +1.6 788,804 + HMPREF1078_RS06915 0.83 +1.5 788,805 - HMPREF1078_RS06915 0.83 +0.5 788,805 - HMPREF1078_RS06915 0.83 -2.0 788,805 - HMPREF1078_RS06915 0.83 -1.3 788,866 + +0.1 788,867 - +1.2 788,871 + -0.5 788,907 + +1.3 788,908 - +0.2 788,908 - -0.5 788,917 - +2.2 788,989 - +0.3 788,991 + -0.6 788,992 - -0.2 788,992 - -3.2 788,992 - +0.9 789,101 - +0.1 789,101 - -0.4 789,101 - +0.7 789,120 - +0.9 789,120 - -3.4 789,123 - +0.9 789,123 - -3.3 789,123 - +0.3 789,126 - -0.6 789,126 - +0.6 789,195 + HMPREF1078_RS06920 0.11 -0.3 789,199 - HMPREF1078_RS06920 0.11 +1.3 789,213 + HMPREF1078_RS06920 0.13 -1.3 789,232 + HMPREF1078_RS06920 0.15 +0.5 789,232 + HMPREF1078_RS06920 0.15 +0.9 789,233 - HMPREF1078_RS06920 0.15 -3.4 789,233 - HMPREF1078_RS06920 0.15 +0.4 789,341 + HMPREF1078_RS06920 0.25 +1.6 789,341 + HMPREF1078_RS06920 0.25 +0.3 789,341 + HMPREF1078_RS06920 0.25 -2.6 789,341 + HMPREF1078_RS06920 0.25 -1.3 789,342 - HMPREF1078_RS06920 0.25 -1.2 789,344 + HMPREF1078_RS06920 0.25 -0.0 789,344 + HMPREF1078_RS06920 0.25 +1.3 789,345 - HMPREF1078_RS06920 0.25 +0.3 789,362 - HMPREF1078_RS06920 0.27 -1.3 789,411 + HMPREF1078_RS06920 0.31 -0.4 789,411 + HMPREF1078_RS06920 0.31 -1.3 789,412 - HMPREF1078_RS06920 0.31 -0.2 789,420 + HMPREF1078_RS06920 0.32 -1.1 789,421 - HMPREF1078_RS06920 0.32 +0.2 789,498 - HMPREF1078_RS06920 0.40 -0.4 789,509 + HMPREF1078_RS06920 0.41 +1.4 789,517 + HMPREF1078_RS06920 0.41 -0.9 789,621 - HMPREF1078_RS06920 0.51 -1.1 789,653 + HMPREF1078_RS06920 0.54 -2.9 789,668 - HMPREF1078_RS06920 0.56 -0.4 789,668 - HMPREF1078_RS06920 0.56 -0.3 789,688 - HMPREF1078_RS06920 0.57 -4.6 789,688 - HMPREF1078_RS06920 0.57 -0.9 789,688 - HMPREF1078_RS06920 0.57 +0.7 789,692 + HMPREF1078_RS06920 0.58 -0.3 789,864 + HMPREF1078_RS06920 0.74 +0.3 789,864 + HMPREF1078_RS06920 0.74 -0.1 789,951 - HMPREF1078_RS06920 0.82 +1.5 789,952 + HMPREF1078_RS06920 0.82 -0.1 789,952 + HMPREF1078_RS06920 0.82 -1.7 789,952 + HMPREF1078_RS06920 0.82 -0.5 789,953 - HMPREF1078_RS06920 0.82 -1.8 789,953 - HMPREF1078_RS06920 0.82 +1.4 789,953 - HMPREF1078_RS06920 0.82 -0.3 789,953 - HMPREF1078_RS06920 0.82 -0.4 789,956 + HMPREF1078_RS06920 0.83 -1.1 789,957 - HMPREF1078_RS06920 0.83 +0.9 789,957 - HMPREF1078_RS06920 0.83 -1.7 789,974 + HMPREF1078_RS06920 0.84 +0.4 789,975 - HMPREF1078_RS06920 0.84 -0.9 789,976 + HMPREF1078_RS06920 0.85 -1.0 789,977 - HMPREF1078_RS06920 0.85 +0.5 789,977 - HMPREF1078_RS06920 0.85 +1.6 789,977 - HMPREF1078_RS06920 0.85 +0.1 789,977 - HMPREF1078_RS06920 0.85 +1.2 790,020 + HMPREF1078_RS06920 0.89 -4.6 790,020 + HMPREF1078_RS06920 0.89 +0.1 790,020 + HMPREF1078_RS06920 0.89 +0.0 790,020 + HMPREF1078_RS06920 0.89 -1.1 790,021 - HMPREF1078_RS06920 0.89 +0.6 790,021 - HMPREF1078_RS06920 0.89 -2.0 790,024 + HMPREF1078_RS06920 0.89 -0.5 790,024 + HMPREF1078_RS06920 0.89 -2.7 790,025 - HMPREF1078_RS06920 0.89 -0.7 790,025 - HMPREF1078_RS06920 0.89 +0.2 790,026 + HMPREF1078_RS06920 0.89 -0.2 790,058 + -0.9 790,066 - +0.4 790,066 - -0.5 790,066 - +0.9 790,099 + -2.7 790,123 - -0.4 790,177 + +1.6 790,178 - -1.0 790,183 + -3.7 790,184 - +0.3 790,244 - +0.4 790,244 - +0.7 790,248 + +0.1 790,248 + -0.4 790,248 + +0.5 790,248 + +0.4 790,248 + -0.2 790,248 + +2.4 790,249 - +2.1 790,249 - +0.3 790,249 - -0.9 790,255 - -0.4 790,256 + -1.9 790,256 + +1.0 790,257 - +0.4 790,288 + -0.2 790,303 + +0.3 790,321 + +1.4 790,321 + +0.7 790,321 + -0.9 790,321 + -2.0 790,321 + +0.8 790,321 + +0.2 790,321 + -1.4 790,322 - -1.0 790,322 - +0.2 790,323 + -1.4 790,323 + +1.7 790,323 + +0.4 790,323 + +1.3 790,418 - HMPREF1078_RS06925 0.13 +1.5 790,524 - HMPREF1078_RS06925 0.20 -0.4 790,619 + HMPREF1078_RS06925 0.27 +0.3 790,619 + HMPREF1078_RS06925 0.27 -0.5 790,620 - HMPREF1078_RS06925 0.27 -0.7 790,635 - HMPREF1078_RS06925 0.28 -0.0 790,639 + HMPREF1078_RS06925 0.29 -3.9 790,646 - HMPREF1078_RS06925 0.29 -0.7 790,767 - HMPREF1078_RS06925 0.38 +1.0 790,824 + HMPREF1078_RS06925 0.42 -1.6 790,824 + HMPREF1078_RS06925 0.42 +0.4 790,824 + HMPREF1078_RS06925 0.42 -1.1 790,824 + HMPREF1078_RS06925 0.42 -0.5 790,843 + HMPREF1078_RS06925 0.43 +1.1 791,028 - HMPREF1078_RS06925 0.57 +0.6 791,052 + HMPREF1078_RS06925 0.58 -0.2 791,086 + HMPREF1078_RS06925 0.61 +0.4
Or see this region's nucleotide sequence