Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04840 and HMPREF1078_RS04845 are separated by 14 nucleotides HMPREF1078_RS04845 and HMPREF1078_RS04850 are separated by 3 nucleotides
HMPREF1078_RS04840: HMPREF1078_RS04840 - type IX secretion system sortase PorU, at 217,137 to 220,502
_RS04840
HMPREF1078_RS04845: HMPREF1078_RS04845 - fumarylacetoacetate hydrolase family protein, at 220,517 to 221,131
_RS04845
HMPREF1078_RS04850: HMPREF1078_RS04850 - redox-sensing transcriptional repressor Rex, at 221,135 to 221,785
_RS04850
Position (kb) 220
221
222 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 219.528 kb on + strand, within HMPREF1078_RS04840 at 219.529 kb on - strand, within HMPREF1078_RS04840 at 219.558 kb on - strand, within HMPREF1078_RS04840 at 219.626 kb on + strand, within HMPREF1078_RS04840 at 219.627 kb on - strand, within HMPREF1078_RS04840 at 219.627 kb on - strand, within HMPREF1078_RS04840 at 219.628 kb on + strand, within HMPREF1078_RS04840 at 219.637 kb on + strand, within HMPREF1078_RS04840 at 219.639 kb on + strand, within HMPREF1078_RS04840 at 219.639 kb on + strand, within HMPREF1078_RS04840 at 219.640 kb on - strand, within HMPREF1078_RS04840 at 219.640 kb on - strand, within HMPREF1078_RS04840 at 219.692 kb on + strand, within HMPREF1078_RS04840 at 219.692 kb on + strand, within HMPREF1078_RS04840 at 219.693 kb on - strand, within HMPREF1078_RS04840 at 219.693 kb on - strand, within HMPREF1078_RS04840 at 219.693 kb on - strand, within HMPREF1078_RS04840 at 219.693 kb on - strand, within HMPREF1078_RS04840 at 219.693 kb on - strand, within HMPREF1078_RS04840 at 219.704 kb on + strand, within HMPREF1078_RS04840 at 219.704 kb on + strand, within HMPREF1078_RS04840 at 219.705 kb on - strand, within HMPREF1078_RS04840 at 219.710 kb on - strand, within HMPREF1078_RS04840 at 219.726 kb on + strand, within HMPREF1078_RS04840 at 219.727 kb on - strand, within HMPREF1078_RS04840 at 219.739 kb on - strand, within HMPREF1078_RS04840 at 219.740 kb on + strand, within HMPREF1078_RS04840 at 219.740 kb on + strand, within HMPREF1078_RS04840 at 219.787 kb on + strand, within HMPREF1078_RS04840 at 219.823 kb on - strand, within HMPREF1078_RS04840 at 219.845 kb on + strand, within HMPREF1078_RS04840 at 219.846 kb on - strand, within HMPREF1078_RS04840 at 219.872 kb on + strand, within HMPREF1078_RS04840 at 219.950 kb on + strand, within HMPREF1078_RS04840 at 219.951 kb on - strand, within HMPREF1078_RS04840 at 219.951 kb on - strand, within HMPREF1078_RS04840 at 219.964 kb on + strand, within HMPREF1078_RS04840 at 220.019 kb on - strand, within HMPREF1078_RS04840 at 220.080 kb on - strand, within HMPREF1078_RS04840 at 220.111 kb on + strand, within HMPREF1078_RS04840 at 220.112 kb on - strand, within HMPREF1078_RS04840 at 220.157 kb on + strand, within HMPREF1078_RS04840 at 220.157 kb on + strand, within HMPREF1078_RS04840 at 220.172 kb on - strand at 220.228 kb on + strand at 220.233 kb on + strand at 220.255 kb on + strand at 220.255 kb on + strand at 220.255 kb on + strand at 220.255 kb on + strand at 220.256 kb on - strand at 220.259 kb on + strand at 220.259 kb on + strand at 220.300 kb on + strand at 220.300 kb on + strand at 220.301 kb on - strand at 220.301 kb on - strand at 220.301 kb on - strand at 220.363 kb on + strand at 220.368 kb on - strand at 220.368 kb on - strand at 220.429 kb on + strand at 220.429 kb on + strand at 220.437 kb on - strand at 220.488 kb on + strand at 220.488 kb on + strand at 220.488 kb on + strand at 220.489 kb on - strand at 220.489 kb on - strand at 220.518 kb on + strand at 220.518 kb on + strand at 220.555 kb on + strand at 220.555 kb on + strand at 220.555 kb on + strand at 220.558 kb on - strand at 220.558 kb on - strand at 220.629 kb on - strand, within HMPREF1078_RS04845 at 220.629 kb on - strand, within HMPREF1078_RS04845 at 220.656 kb on + strand, within HMPREF1078_RS04845 at 220.656 kb on + strand, within HMPREF1078_RS04845 at 220.687 kb on + strand, within HMPREF1078_RS04845 at 220.688 kb on - strand, within HMPREF1078_RS04845 at 220.697 kb on - strand, within HMPREF1078_RS04845 at 220.723 kb on + strand, within HMPREF1078_RS04845 at 220.946 kb on + strand, within HMPREF1078_RS04845 at 221.045 kb on - strand, within HMPREF1078_RS04845 at 221.054 kb on - strand, within HMPREF1078_RS04845 at 221.104 kb on - strand at 221.115 kb on - strand at 221.132 kb on - strand at 221.133 kb on + strand at 221.133 kb on + strand at 221.134 kb on - strand at 221.184 kb on + strand at 221.184 kb on + strand at 221.184 kb on + strand at 221.184 kb on + strand at 221.185 kb on - strand at 221.185 kb on - strand at 221.185 kb on - strand at 221.185 kb on - strand at 221.189 kb on - strand at 221.189 kb on - strand at 221.189 kb on - strand at 221.189 kb on - strand at 221.189 kb on - strand at 221.195 kb on - strand at 221.195 kb on - strand at 221.195 kb on - strand at 221.195 kb on - strand at 221.338 kb on - strand, within HMPREF1078_RS04850 at 221.515 kb on + strand, within HMPREF1078_RS04850 at 221.600 kb on - strand, within HMPREF1078_RS04850 at 221.666 kb on - strand, within HMPREF1078_RS04850 at 221.672 kb on + strand, within HMPREF1078_RS04850 at 221.718 kb on + strand, within HMPREF1078_RS04850 at 221.718 kb on + strand, within HMPREF1078_RS04850 at 221.800 kb on + strand at 221.800 kb on + strand at 221.801 kb on - strand at 221.806 kb on - strand at 221.907 kb on + strand at 221.909 kb on + strand at 221.910 kb on - strand at 221.936 kb on + strand at 221.937 kb on - strand at 221.937 kb on - strand at 221.939 kb on + strand at 221.987 kb on + strand at 221.991 kb on + strand at 221.992 kb on - strand at 222.007 kb on + strand at 222.016 kb on - strand at 222.048 kb on - strand at 222.053 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 remove 219,528 + HMPREF1078_RS04840 0.71 -3.8 219,529 - HMPREF1078_RS04840 0.71 -2.1 219,558 - HMPREF1078_RS04840 0.72 -4.1 219,626 + HMPREF1078_RS04840 0.74 -1.9 219,627 - HMPREF1078_RS04840 0.74 -3.6 219,627 - HMPREF1078_RS04840 0.74 -2.0 219,628 + HMPREF1078_RS04840 0.74 -3.8 219,637 + HMPREF1078_RS04840 0.74 -3.0 219,639 + HMPREF1078_RS04840 0.74 +0.1 219,639 + HMPREF1078_RS04840 0.74 -0.9 219,640 - HMPREF1078_RS04840 0.74 -3.0 219,640 - HMPREF1078_RS04840 0.74 -2.5 219,692 + HMPREF1078_RS04840 0.76 -1.6 219,692 + HMPREF1078_RS04840 0.76 -1.6 219,693 - HMPREF1078_RS04840 0.76 -2.0 219,693 - HMPREF1078_RS04840 0.76 -4.1 219,693 - HMPREF1078_RS04840 0.76 -3.8 219,693 - HMPREF1078_RS04840 0.76 -2.4 219,693 - HMPREF1078_RS04840 0.76 -2.1 219,704 + HMPREF1078_RS04840 0.76 -2.9 219,704 + HMPREF1078_RS04840 0.76 -2.0 219,705 - HMPREF1078_RS04840 0.76 -3.4 219,710 - HMPREF1078_RS04840 0.76 -0.3 219,726 + HMPREF1078_RS04840 0.77 -0.9 219,727 - HMPREF1078_RS04840 0.77 -3.7 219,739 - HMPREF1078_RS04840 0.77 -1.4 219,740 + HMPREF1078_RS04840 0.77 -2.9 219,740 + HMPREF1078_RS04840 0.77 -2.3 219,787 + HMPREF1078_RS04840 0.79 +0.1 219,823 - HMPREF1078_RS04840 0.80 -1.1 219,845 + HMPREF1078_RS04840 0.80 -2.7 219,846 - HMPREF1078_RS04840 0.80 -2.9 219,872 + HMPREF1078_RS04840 0.81 -3.2 219,950 + HMPREF1078_RS04840 0.84 -1.4 219,951 - HMPREF1078_RS04840 0.84 -3.3 219,951 - HMPREF1078_RS04840 0.84 -4.0 219,964 + HMPREF1078_RS04840 0.84 -1.5 220,019 - HMPREF1078_RS04840 0.86 -0.9 220,080 - HMPREF1078_RS04840 0.87 -0.4 220,111 + HMPREF1078_RS04840 0.88 -0.8 220,112 - HMPREF1078_RS04840 0.88 -3.9 220,157 + HMPREF1078_RS04840 0.90 -2.6 220,157 + HMPREF1078_RS04840 0.90 -2.4 220,172 - -5.0 220,228 + -3.6 220,233 + -3.4 220,255 + -3.1 220,255 + -1.9 220,255 + -0.9 220,255 + -0.8 220,256 - -2.9 220,259 + -2.6 220,259 + -1.4 220,300 + -3.8 220,300 + -1.6 220,301 - -2.5 220,301 - -2.2 220,301 - -2.6 220,363 + -3.3 220,368 - -3.1 220,368 - -4.0 220,429 + -3.5 220,429 + -3.1 220,437 - -2.9 220,488 + -3.2 220,488 + -3.7 220,488 + -1.9 220,489 - -3.8 220,489 - -2.5 220,518 + -2.5 220,518 + -2.5 220,555 + -1.4 220,555 + -0.9 220,555 + -3.2 220,558 - +0.9 220,558 - -1.8 220,629 - HMPREF1078_RS04845 0.18 -0.5 220,629 - HMPREF1078_RS04845 0.18 -3.2 220,656 + HMPREF1078_RS04845 0.23 -1.9 220,656 + HMPREF1078_RS04845 0.23 -1.1 220,687 + HMPREF1078_RS04845 0.28 -3.4 220,688 - HMPREF1078_RS04845 0.28 -1.0 220,697 - HMPREF1078_RS04845 0.29 -1.0 220,723 + HMPREF1078_RS04845 0.33 -2.6 220,946 + HMPREF1078_RS04845 0.70 -1.4 221,045 - HMPREF1078_RS04845 0.86 -2.0 221,054 - HMPREF1078_RS04845 0.87 -3.4 221,104 - +0.5 221,115 - -1.0 221,132 - +2.4 221,133 + +0.6 221,133 + -0.5 221,134 - +1.2 221,184 + +0.5 221,184 + +0.5 221,184 + +0.7 221,184 + -0.8 221,185 - -0.3 221,185 - -1.9 221,185 - +0.1 221,185 - -1.3 221,189 - -1.0 221,189 - +0.5 221,189 - -1.9 221,189 - -0.3 221,189 - +1.0 221,195 - -0.8 221,195 - +0.1 221,195 - +0.5 221,195 - -1.2 221,338 - HMPREF1078_RS04850 0.31 -0.9 221,515 + HMPREF1078_RS04850 0.58 -2.2 221,600 - HMPREF1078_RS04850 0.71 +0.3 221,666 - HMPREF1078_RS04850 0.82 +0.1 221,672 + HMPREF1078_RS04850 0.82 -0.5 221,718 + HMPREF1078_RS04850 0.90 -0.1 221,718 + HMPREF1078_RS04850 0.90 -0.4 221,800 + -0.7 221,800 + +0.6 221,801 - +0.1 221,806 - +0.8 221,907 + -0.6 221,909 + +0.9 221,910 - +0.5 221,936 + -2.2 221,937 - +0.8 221,937 - -0.0 221,939 + -0.5 221,987 + +0.2 221,991 + +1.3 221,992 - -0.8 222,007 + +2.1 222,016 - -2.5 222,048 - +1.5 222,053 - +0.1
Or see this region's nucleotide sequence