Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03245 and HMPREF1078_RS03250 are separated by 83 nucleotides HMPREF1078_RS03250 and HMPREF1078_RS03255 are separated by 132 nucleotides HMPREF1078_RS03255 and HMPREF1078_RS03260 are separated by 38 nucleotides HMPREF1078_RS03260 and HMPREF1078_RS03265 are separated by 14 nucleotides
HMPREF1078_RS03245: HMPREF1078_RS03245 - DUF4099 domain-containing protein, at 769,107 to 769,892
_RS03245
HMPREF1078_RS03250: HMPREF1078_RS03250 - glucosaminidase domain-containing protein, at 769,976 to 770,611
_RS03250
HMPREF1078_RS03255: HMPREF1078_RS03255 - hypothetical protein, at 770,744 to 772,552
_RS03255
HMPREF1078_RS03260: HMPREF1078_RS03260 - hypothetical protein, at 772,591 to 773,157
_RS03260
HMPREF1078_RS03265: HMPREF1078_RS03265 - hypothetical protein, at 773,172 to 773,642
_RS03265
Position (kb) 770
771
772
773 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 769.746 kb on + strand, within HMPREF1078_RS03245 at 769.804 kb on - strand, within HMPREF1078_RS03245 at 769.836 kb on + strand at 769.860 kb on + strand at 769.895 kb on + strand at 769.905 kb on - strand at 770.013 kb on + strand at 770.042 kb on + strand, within HMPREF1078_RS03250 at 770.043 kb on - strand, within HMPREF1078_RS03250 at 770.096 kb on + strand, within HMPREF1078_RS03250 at 770.097 kb on - strand, within HMPREF1078_RS03250 at 770.098 kb on + strand, within HMPREF1078_RS03250 at 770.099 kb on - strand, within HMPREF1078_RS03250 at 770.120 kb on - strand, within HMPREF1078_RS03250 at 770.266 kb on + strand, within HMPREF1078_RS03250 at 770.266 kb on + strand, within HMPREF1078_RS03250 at 770.293 kb on + strand, within HMPREF1078_RS03250 at 770.294 kb on - strand, within HMPREF1078_RS03250 at 770.311 kb on + strand, within HMPREF1078_RS03250 at 770.312 kb on - strand, within HMPREF1078_RS03250 at 770.337 kb on + strand, within HMPREF1078_RS03250 at 770.367 kb on + strand, within HMPREF1078_RS03250 at 770.397 kb on + strand, within HMPREF1078_RS03250 at 770.398 kb on - strand, within HMPREF1078_RS03250 at 770.413 kb on + strand, within HMPREF1078_RS03250 at 770.414 kb on - strand, within HMPREF1078_RS03250 at 770.414 kb on - strand, within HMPREF1078_RS03250 at 770.429 kb on - strand, within HMPREF1078_RS03250 at 770.440 kb on + strand, within HMPREF1078_RS03250 at 770.440 kb on + strand, within HMPREF1078_RS03250 at 770.451 kb on - strand, within HMPREF1078_RS03250 at 770.451 kb on - strand, within HMPREF1078_RS03250 at 770.453 kb on + strand, within HMPREF1078_RS03250 at 770.516 kb on - strand, within HMPREF1078_RS03250 at 770.516 kb on - strand, within HMPREF1078_RS03250 at 770.573 kb on + strand at 770.574 kb on - strand at 770.574 kb on - strand at 770.574 kb on - strand at 770.578 kb on + strand at 770.579 kb on - strand at 770.581 kb on + strand at 770.582 kb on - strand at 770.596 kb on - strand at 770.596 kb on - strand at 770.596 kb on - strand at 770.596 kb on - strand at 770.596 kb on - strand at 770.596 kb on - strand at 770.599 kb on - strand at 770.604 kb on + strand at 770.604 kb on + strand at 770.608 kb on - strand at 770.610 kb on - strand at 770.610 kb on - strand at 770.627 kb on + strand at 770.627 kb on + strand at 770.663 kb on - strand at 770.663 kb on - strand at 770.663 kb on - strand at 770.667 kb on + strand at 770.668 kb on - strand at 770.720 kb on - strand at 770.720 kb on - strand at 770.724 kb on + strand at 770.728 kb on + strand at 770.728 kb on + strand at 770.729 kb on - strand at 770.729 kb on - strand at 770.729 kb on - strand at 770.729 kb on - strand at 770.729 kb on - strand at 770.729 kb on - strand at 770.729 kb on - strand at 770.729 kb on - strand at 770.738 kb on + strand at 770.739 kb on - strand at 770.786 kb on - strand at 770.786 kb on - strand at 770.890 kb on - strand at 770.948 kb on - strand, within HMPREF1078_RS03255 at 770.956 kb on + strand, within HMPREF1078_RS03255 at 770.956 kb on + strand, within HMPREF1078_RS03255 at 770.957 kb on - strand, within HMPREF1078_RS03255 at 770.957 kb on - strand, within HMPREF1078_RS03255 at 770.984 kb on + strand, within HMPREF1078_RS03255 at 771.017 kb on + strand, within HMPREF1078_RS03255 at 771.089 kb on + strand, within HMPREF1078_RS03255 at 771.089 kb on + strand, within HMPREF1078_RS03255 at 771.089 kb on + strand, within HMPREF1078_RS03255 at 771.090 kb on - strand, within HMPREF1078_RS03255 at 771.090 kb on - strand, within HMPREF1078_RS03255 at 771.164 kb on + strand, within HMPREF1078_RS03255 at 771.188 kb on - strand, within HMPREF1078_RS03255 at 771.208 kb on - strand, within HMPREF1078_RS03255 at 771.248 kb on + strand, within HMPREF1078_RS03255 at 771.248 kb on + strand, within HMPREF1078_RS03255 at 771.249 kb on - strand, within HMPREF1078_RS03255 at 771.253 kb on + strand, within HMPREF1078_RS03255 at 771.253 kb on + strand, within HMPREF1078_RS03255 at 771.290 kb on + strand, within HMPREF1078_RS03255 at 771.290 kb on + strand, within HMPREF1078_RS03255 at 771.411 kb on + strand, within HMPREF1078_RS03255 at 771.412 kb on - strand, within HMPREF1078_RS03255 at 771.503 kb on + strand, within HMPREF1078_RS03255 at 771.537 kb on - strand, within HMPREF1078_RS03255 at 771.541 kb on + strand, within HMPREF1078_RS03255 at 771.581 kb on - strand, within HMPREF1078_RS03255 at 771.581 kb on - strand, within HMPREF1078_RS03255 at 771.581 kb on - strand, within HMPREF1078_RS03255 at 771.582 kb on + strand, within HMPREF1078_RS03255 at 771.582 kb on + strand, within HMPREF1078_RS03255 at 771.589 kb on + strand, within HMPREF1078_RS03255 at 771.592 kb on + strand, within HMPREF1078_RS03255 at 771.633 kb on - strand, within HMPREF1078_RS03255 at 771.662 kb on + strand, within HMPREF1078_RS03255 at 771.662 kb on + strand, within HMPREF1078_RS03255 at 771.662 kb on + strand, within HMPREF1078_RS03255 at 771.662 kb on + strand, within HMPREF1078_RS03255 at 771.663 kb on - strand, within HMPREF1078_RS03255 at 771.663 kb on - strand, within HMPREF1078_RS03255 at 771.663 kb on - strand, within HMPREF1078_RS03255 at 771.669 kb on + strand, within HMPREF1078_RS03255 at 771.669 kb on + strand, within HMPREF1078_RS03255 at 771.672 kb on + strand, within HMPREF1078_RS03255 at 771.681 kb on + strand, within HMPREF1078_RS03255 at 771.681 kb on + strand, within HMPREF1078_RS03255 at 771.705 kb on + strand, within HMPREF1078_RS03255 at 771.850 kb on + strand, within HMPREF1078_RS03255 at 771.851 kb on - strand, within HMPREF1078_RS03255 at 771.871 kb on - strand, within HMPREF1078_RS03255 at 771.884 kb on + strand, within HMPREF1078_RS03255 at 771.884 kb on + strand, within HMPREF1078_RS03255 at 771.891 kb on - strand, within HMPREF1078_RS03255 at 772.032 kb on - strand, within HMPREF1078_RS03255 at 772.096 kb on + strand, within HMPREF1078_RS03255 at 772.110 kb on - strand, within HMPREF1078_RS03255 at 772.111 kb on + strand, within HMPREF1078_RS03255 at 772.112 kb on - strand, within HMPREF1078_RS03255 at 772.178 kb on + strand, within HMPREF1078_RS03255 at 772.182 kb on + strand, within HMPREF1078_RS03255 at 772.223 kb on - strand, within HMPREF1078_RS03255 at 772.223 kb on - strand, within HMPREF1078_RS03255 at 772.300 kb on - strand, within HMPREF1078_RS03255 at 772.300 kb on - strand, within HMPREF1078_RS03255 at 772.310 kb on + strand, within HMPREF1078_RS03255 at 772.332 kb on - strand, within HMPREF1078_RS03255 at 772.334 kb on - strand, within HMPREF1078_RS03255 at 772.334 kb on - strand, within HMPREF1078_RS03255 at 772.334 kb on - strand, within HMPREF1078_RS03255 at 772.389 kb on + strand at 772.425 kb on + strand at 772.444 kb on + strand at 772.445 kb on - strand at 772.445 kb on - strand at 772.453 kb on - strand at 772.480 kb on + strand at 772.480 kb on + strand at 772.496 kb on - strand at 772.519 kb on + strand at 772.520 kb on - strand at 772.520 kb on - strand at 772.520 kb on - strand at 772.520 kb on - strand at 772.520 kb on - strand at 772.540 kb on - strand at 772.550 kb on + strand at 772.554 kb on + strand at 772.591 kb on - strand at 772.645 kb on - strand at 772.729 kb on - strand, within HMPREF1078_RS03260 at 772.749 kb on + strand, within HMPREF1078_RS03260 at 772.755 kb on - strand, within HMPREF1078_RS03260 at 772.760 kb on - strand, within HMPREF1078_RS03260 at 772.810 kb on + strand, within HMPREF1078_RS03260 at 772.811 kb on - strand, within HMPREF1078_RS03260 at 772.848 kb on - strand, within HMPREF1078_RS03260 at 772.848 kb on - strand, within HMPREF1078_RS03260 at 772.850 kb on - strand, within HMPREF1078_RS03260 at 772.850 kb on - strand, within HMPREF1078_RS03260 at 772.873 kb on - strand, within HMPREF1078_RS03260 at 772.924 kb on - strand, within HMPREF1078_RS03260 at 772.978 kb on - strand, within HMPREF1078_RS03260 at 772.985 kb on - strand, within HMPREF1078_RS03260 at 773.002 kb on - strand, within HMPREF1078_RS03260 at 773.018 kb on + strand, within HMPREF1078_RS03260 at 773.018 kb on + strand, within HMPREF1078_RS03260 at 773.066 kb on + strand, within HMPREF1078_RS03260 at 773.066 kb on - strand, within HMPREF1078_RS03260 at 773.110 kb on - strand at 773.172 kb on - strand at 773.212 kb on + strand at 773.213 kb on - strand at 773.297 kb on + strand, within HMPREF1078_RS03265 at 773.324 kb on + strand, within HMPREF1078_RS03265 at 773.325 kb on - strand, within HMPREF1078_RS03265 at 773.325 kb on - strand, within HMPREF1078_RS03265 at 773.364 kb on + strand, within HMPREF1078_RS03265 at 773.364 kb on + strand, within HMPREF1078_RS03265 at 773.374 kb on + strand, within HMPREF1078_RS03265 at 773.390 kb on + strand, within HMPREF1078_RS03265 at 773.390 kb on + strand, within HMPREF1078_RS03265 at 773.390 kb on + strand, within HMPREF1078_RS03265 at 773.472 kb on + strand, within HMPREF1078_RS03265 at 773.488 kb on + strand, within HMPREF1078_RS03265 at 773.488 kb on + strand, within HMPREF1078_RS03265 at 773.488 kb on + strand, within HMPREF1078_RS03265 at 773.489 kb on - strand, within HMPREF1078_RS03265 at 773.489 kb on - strand, within HMPREF1078_RS03265 at 773.489 kb on - strand, within HMPREF1078_RS03265 at 773.492 kb on + strand, within HMPREF1078_RS03265 at 773.493 kb on - strand, within HMPREF1078_RS03265 at 773.517 kb on + strand, within HMPREF1078_RS03265 at 773.518 kb on - strand, within HMPREF1078_RS03265 at 773.521 kb on - strand, within HMPREF1078_RS03265 at 773.529 kb on - strand, within HMPREF1078_RS03265 at 773.532 kb on + strand, within HMPREF1078_RS03265 at 773.549 kb on + strand, within HMPREF1078_RS03265
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 remove 769,746 + HMPREF1078_RS03245 0.81 +2.4 769,804 - HMPREF1078_RS03245 0.89 +0.5 769,836 + -2.5 769,860 + +2.4 769,895 + -2.0 769,905 - -1.9 770,013 + +1.1 770,042 + HMPREF1078_RS03250 0.10 -1.9 770,043 - HMPREF1078_RS03250 0.11 -0.8 770,096 + HMPREF1078_RS03250 0.19 +4.5 770,097 - HMPREF1078_RS03250 0.19 +0.1 770,098 + HMPREF1078_RS03250 0.19 +0.2 770,099 - HMPREF1078_RS03250 0.19 -0.4 770,120 - HMPREF1078_RS03250 0.23 -2.9 770,266 + HMPREF1078_RS03250 0.46 +0.2 770,266 + HMPREF1078_RS03250 0.46 -0.6 770,293 + HMPREF1078_RS03250 0.50 -2.0 770,294 - HMPREF1078_RS03250 0.50 -0.1 770,311 + HMPREF1078_RS03250 0.53 -2.1 770,312 - HMPREF1078_RS03250 0.53 +4.2 770,337 + HMPREF1078_RS03250 0.57 -1.3 770,367 + HMPREF1078_RS03250 0.61 -0.4 770,397 + HMPREF1078_RS03250 0.66 +1.2 770,398 - HMPREF1078_RS03250 0.66 -1.1 770,413 + HMPREF1078_RS03250 0.69 +0.1 770,414 - HMPREF1078_RS03250 0.69 -2.6 770,414 - HMPREF1078_RS03250 0.69 -0.9 770,429 - HMPREF1078_RS03250 0.71 -0.2 770,440 + HMPREF1078_RS03250 0.73 -1.4 770,440 + HMPREF1078_RS03250 0.73 -0.4 770,451 - HMPREF1078_RS03250 0.75 -1.5 770,451 - HMPREF1078_RS03250 0.75 +1.5 770,453 + HMPREF1078_RS03250 0.75 +2.2 770,516 - HMPREF1078_RS03250 0.85 -0.4 770,516 - HMPREF1078_RS03250 0.85 +1.3 770,573 + -2.5 770,574 - +1.8 770,574 - +0.6 770,574 - -2.7 770,578 + -2.5 770,579 - +1.4 770,581 + +0.3 770,582 - -1.3 770,596 - -1.5 770,596 - +0.6 770,596 - +0.1 770,596 - +1.2 770,596 - +1.1 770,596 - +0.2 770,599 - -0.9 770,604 + +3.6 770,604 + -0.2 770,608 - +1.3 770,610 - +1.4 770,610 - -2.1 770,627 + -2.7 770,627 + +0.3 770,663 - -1.8 770,663 - -3.4 770,663 - +1.5 770,667 + +0.5 770,668 - +0.6 770,720 - -0.4 770,720 - +0.1 770,724 + -0.1 770,728 + +0.9 770,728 + -1.0 770,729 - -3.3 770,729 - -2.3 770,729 - +0.5 770,729 - -0.2 770,729 - -2.8 770,729 - -0.5 770,729 - +0.5 770,729 - -0.4 770,738 + -3.7 770,739 - -1.8 770,786 - -0.9 770,786 - +0.5 770,890 - +0.1 770,948 - HMPREF1078_RS03255 0.11 -0.9 770,956 + HMPREF1078_RS03255 0.12 -0.5 770,956 + HMPREF1078_RS03255 0.12 -1.1 770,957 - HMPREF1078_RS03255 0.12 -2.0 770,957 - HMPREF1078_RS03255 0.12 -2.3 770,984 + HMPREF1078_RS03255 0.13 -1.2 771,017 + HMPREF1078_RS03255 0.15 +1.0 771,089 + HMPREF1078_RS03255 0.19 +1.4 771,089 + HMPREF1078_RS03255 0.19 -1.4 771,089 + HMPREF1078_RS03255 0.19 -0.4 771,090 - HMPREF1078_RS03255 0.19 -2.1 771,090 - HMPREF1078_RS03255 0.19 -0.7 771,164 + HMPREF1078_RS03255 0.23 -1.9 771,188 - HMPREF1078_RS03255 0.25 +1.6 771,208 - HMPREF1078_RS03255 0.26 -0.2 771,248 + HMPREF1078_RS03255 0.28 -0.7 771,248 + HMPREF1078_RS03255 0.28 +1.6 771,249 - HMPREF1078_RS03255 0.28 -0.2 771,253 + HMPREF1078_RS03255 0.28 -1.1 771,253 + HMPREF1078_RS03255 0.28 +1.4 771,290 + HMPREF1078_RS03255 0.30 +1.1 771,290 + HMPREF1078_RS03255 0.30 +0.6 771,411 + HMPREF1078_RS03255 0.37 +0.7 771,412 - HMPREF1078_RS03255 0.37 -1.2 771,503 + HMPREF1078_RS03255 0.42 -2.2 771,537 - HMPREF1078_RS03255 0.44 -3.0 771,541 + HMPREF1078_RS03255 0.44 -2.0 771,581 - HMPREF1078_RS03255 0.46 +0.3 771,581 - HMPREF1078_RS03255 0.46 +0.1 771,581 - HMPREF1078_RS03255 0.46 -0.1 771,582 + HMPREF1078_RS03255 0.46 +1.1 771,582 + HMPREF1078_RS03255 0.46 -0.8 771,589 + HMPREF1078_RS03255 0.47 -3.6 771,592 + HMPREF1078_RS03255 0.47 +1.1 771,633 - HMPREF1078_RS03255 0.49 -0.2 771,662 + HMPREF1078_RS03255 0.51 +0.8 771,662 + HMPREF1078_RS03255 0.51 -2.4 771,662 + HMPREF1078_RS03255 0.51 +0.6 771,662 + HMPREF1078_RS03255 0.51 +0.4 771,663 - HMPREF1078_RS03255 0.51 -0.0 771,663 - HMPREF1078_RS03255 0.51 +0.8 771,663 - HMPREF1078_RS03255 0.51 -1.9 771,669 + HMPREF1078_RS03255 0.51 -1.2 771,669 + HMPREF1078_RS03255 0.51 -0.5 771,672 + HMPREF1078_RS03255 0.51 -1.1 771,681 + HMPREF1078_RS03255 0.52 -0.7 771,681 + HMPREF1078_RS03255 0.52 -1.2 771,705 + HMPREF1078_RS03255 0.53 +0.3 771,850 + HMPREF1078_RS03255 0.61 -0.2 771,851 - HMPREF1078_RS03255 0.61 +0.3 771,871 - HMPREF1078_RS03255 0.62 +0.4 771,884 + HMPREF1078_RS03255 0.63 -1.2 771,884 + HMPREF1078_RS03255 0.63 -0.2 771,891 - HMPREF1078_RS03255 0.63 +0.2 772,032 - HMPREF1078_RS03255 0.71 +1.7 772,096 + HMPREF1078_RS03255 0.75 -0.5 772,110 - HMPREF1078_RS03255 0.76 +1.6 772,111 + HMPREF1078_RS03255 0.76 -0.6 772,112 - HMPREF1078_RS03255 0.76 +0.3 772,178 + HMPREF1078_RS03255 0.79 -1.3 772,182 + HMPREF1078_RS03255 0.79 -2.4 772,223 - HMPREF1078_RS03255 0.82 +0.1 772,223 - HMPREF1078_RS03255 0.82 -0.8 772,300 - HMPREF1078_RS03255 0.86 +0.3 772,300 - HMPREF1078_RS03255 0.86 +2.0 772,310 + HMPREF1078_RS03255 0.87 -0.1 772,332 - HMPREF1078_RS03255 0.88 -1.5 772,334 - HMPREF1078_RS03255 0.88 +0.3 772,334 - HMPREF1078_RS03255 0.88 -0.3 772,334 - HMPREF1078_RS03255 0.88 +1.8 772,389 + -1.2 772,425 + -0.3 772,444 + +1.6 772,445 - +1.1 772,445 - +0.5 772,453 - +2.6 772,480 + -1.4 772,480 + -0.7 772,496 - +0.3 772,519 + -1.2 772,520 - -1.4 772,520 - -2.5 772,520 - -1.9 772,520 - -0.1 772,520 - +0.1 772,540 - -1.4 772,550 + -3.0 772,554 + -1.8 772,591 - +0.8 772,645 - -1.9 772,729 - HMPREF1078_RS03260 0.24 -0.4 772,749 + HMPREF1078_RS03260 0.28 -0.2 772,755 - HMPREF1078_RS03260 0.29 +1.1 772,760 - HMPREF1078_RS03260 0.30 -3.4 772,810 + HMPREF1078_RS03260 0.39 -1.4 772,811 - HMPREF1078_RS03260 0.39 +0.2 772,848 - HMPREF1078_RS03260 0.45 +0.1 772,848 - HMPREF1078_RS03260 0.45 +1.4 772,850 - HMPREF1078_RS03260 0.46 -1.5 772,850 - HMPREF1078_RS03260 0.46 +1.4 772,873 - HMPREF1078_RS03260 0.50 +1.3 772,924 - HMPREF1078_RS03260 0.59 -1.4 772,978 - HMPREF1078_RS03260 0.68 +1.6 772,985 - HMPREF1078_RS03260 0.69 +0.6 773,002 - HMPREF1078_RS03260 0.72 -1.1 773,018 + HMPREF1078_RS03260 0.75 -0.8 773,018 + HMPREF1078_RS03260 0.75 +0.5 773,066 + HMPREF1078_RS03260 0.84 +2.5 773,066 - HMPREF1078_RS03260 0.84 +0.3 773,110 - -1.4 773,172 - -1.2 773,212 + -0.5 773,213 - -0.7 773,297 + HMPREF1078_RS03265 0.27 -2.3 773,324 + HMPREF1078_RS03265 0.32 -0.8 773,325 - HMPREF1078_RS03265 0.32 +2.0 773,325 - HMPREF1078_RS03265 0.32 +0.9 773,364 + HMPREF1078_RS03265 0.41 +0.1 773,364 + HMPREF1078_RS03265 0.41 +1.3 773,374 + HMPREF1078_RS03265 0.43 +0.1 773,390 + HMPREF1078_RS03265 0.46 +0.5 773,390 + HMPREF1078_RS03265 0.46 -0.2 773,390 + HMPREF1078_RS03265 0.46 +0.6 773,472 + HMPREF1078_RS03265 0.64 +1.1 773,488 + HMPREF1078_RS03265 0.67 -2.3 773,488 + HMPREF1078_RS03265 0.67 -0.7 773,488 + HMPREF1078_RS03265 0.67 -1.6 773,489 - HMPREF1078_RS03265 0.67 +1.6 773,489 - HMPREF1078_RS03265 0.67 +3.4 773,489 - HMPREF1078_RS03265 0.67 +0.3 773,492 + HMPREF1078_RS03265 0.68 -1.6 773,493 - HMPREF1078_RS03265 0.68 -1.1 773,517 + HMPREF1078_RS03265 0.73 +0.0 773,518 - HMPREF1078_RS03265 0.73 -2.3 773,521 - HMPREF1078_RS03265 0.74 -1.3 773,529 - HMPREF1078_RS03265 0.76 -0.2 773,532 + HMPREF1078_RS03265 0.76 +1.2 773,549 + HMPREF1078_RS03265 0.80 +2.3
Or see this region's nucleotide sequence