Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02860 and HMPREF1078_RS02865 are separated by 18 nucleotides HMPREF1078_RS02865 and HMPREF1078_RS02870 overlap by 8 nucleotides HMPREF1078_RS02870 and HMPREF1078_RS02875 are separated by 535 nucleotides HMPREF1078_RS02875 and HMPREF1078_RS18205 are separated by 1 nucleotides
HMPREF1078_RS02860: HMPREF1078_RS02860 - PD-(D/E)XK nuclease-like domain-containing protein, at 688,065 to 689,270
_RS02860
HMPREF1078_RS02865: HMPREF1078_RS02865 - hypothetical protein, at 689,289 to 689,717
_RS02865
HMPREF1078_RS02870: HMPREF1078_RS02870 - hypothetical protein, at 689,710 to 690,447
_RS02870
HMPREF1078_RS02875: HMPREF1078_RS02875 - recombination protein NinG, at 690,983 to 691,423
_RS02875
HMPREF1078_RS18205: HMPREF1078_RS18205 - DUF4373 domain-containing protein, at 691,425 to 692,189
_RS18205
Position (kb) 689
690
691 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 688.725 kb on - strand, within HMPREF1078_RS02860 at 688.727 kb on + strand, within HMPREF1078_RS02860 at 688.727 kb on + strand, within HMPREF1078_RS02860 at 688.728 kb on - strand, within HMPREF1078_RS02860 at 688.732 kb on - strand, within HMPREF1078_RS02860 at 688.784 kb on + strand, within HMPREF1078_RS02860 at 688.785 kb on - strand, within HMPREF1078_RS02860 at 688.923 kb on - strand, within HMPREF1078_RS02860 at 688.935 kb on - strand, within HMPREF1078_RS02860 at 688.985 kb on - strand, within HMPREF1078_RS02860 at 688.985 kb on - strand, within HMPREF1078_RS02860 at 688.985 kb on - strand, within HMPREF1078_RS02860 at 689.110 kb on - strand, within HMPREF1078_RS02860 at 689.115 kb on + strand, within HMPREF1078_RS02860 at 689.164 kb on - strand at 689.173 kb on - strand at 689.208 kb on - strand at 689.208 kb on - strand at 689.259 kb on - strand at 689.269 kb on - strand at 689.269 kb on - strand at 689.273 kb on - strand at 689.289 kb on - strand at 689.340 kb on - strand, within HMPREF1078_RS02865 at 689.379 kb on - strand, within HMPREF1078_RS02865 at 689.379 kb on - strand, within HMPREF1078_RS02865 at 689.379 kb on - strand, within HMPREF1078_RS02865 at 689.488 kb on - strand, within HMPREF1078_RS02865 at 689.617 kb on - strand, within HMPREF1078_RS02865 at 689.732 kb on + strand at 689.732 kb on + strand at 689.733 kb on - strand at 689.733 kb on - strand at 689.733 kb on - strand at 689.750 kb on - strand at 689.769 kb on - strand at 689.832 kb on + strand, within HMPREF1078_RS02870 at 689.846 kb on + strand, within HMPREF1078_RS02870 at 689.936 kb on + strand, within HMPREF1078_RS02870 at 689.942 kb on + strand, within HMPREF1078_RS02870 at 689.942 kb on + strand, within HMPREF1078_RS02870 at 689.943 kb on - strand, within HMPREF1078_RS02870 at 689.943 kb on - strand, within HMPREF1078_RS02870 at 689.943 kb on - strand, within HMPREF1078_RS02870 at 689.966 kb on - strand, within HMPREF1078_RS02870 at 689.974 kb on + strand, within HMPREF1078_RS02870 at 690.028 kb on - strand, within HMPREF1078_RS02870 at 690.028 kb on - strand, within HMPREF1078_RS02870 at 690.051 kb on + strand, within HMPREF1078_RS02870 at 690.138 kb on + strand, within HMPREF1078_RS02870 at 690.284 kb on + strand, within HMPREF1078_RS02870 at 690.338 kb on + strand, within HMPREF1078_RS02870 at 690.371 kb on - strand, within HMPREF1078_RS02870 at 690.371 kb on - strand, within HMPREF1078_RS02870 at 690.406 kb on - strand at 690.426 kb on + strand at 690.427 kb on - strand at 690.432 kb on - strand at 690.438 kb on - strand at 690.438 kb on - strand at 690.450 kb on - strand at 690.469 kb on - strand at 690.469 kb on - strand at 690.613 kb on - strand at 690.766 kb on - strand at 690.766 kb on - strand at 690.766 kb on - strand at 690.766 kb on - strand at 690.766 kb on - strand at 690.809 kb on - strand at 690.809 kb on - strand at 690.856 kb on + strand at 690.872 kb on - strand at 690.922 kb on + strand at 690.927 kb on - strand at 690.992 kb on - strand at 690.994 kb on + strand at 690.995 kb on - strand at 691.030 kb on + strand, within HMPREF1078_RS02875 at 691.031 kb on - strand, within HMPREF1078_RS02875 at 691.084 kb on - strand, within HMPREF1078_RS02875 at 691.166 kb on + strand, within HMPREF1078_RS02875 at 691.171 kb on - strand, within HMPREF1078_RS02875 at 691.183 kb on + strand, within HMPREF1078_RS02875 at 691.183 kb on + strand, within HMPREF1078_RS02875 at 691.184 kb on - strand, within HMPREF1078_RS02875 at 691.184 kb on - strand, within HMPREF1078_RS02875 at 691.228 kb on + strand, within HMPREF1078_RS02875 at 691.245 kb on + strand, within HMPREF1078_RS02875 at 691.257 kb on + strand, within HMPREF1078_RS02875 at 691.257 kb on - strand, within HMPREF1078_RS02875 at 691.258 kb on - strand, within HMPREF1078_RS02875 at 691.421 kb on + strand at 691.422 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 remove 688,725 - HMPREF1078_RS02860 0.55 +0.5 688,727 + HMPREF1078_RS02860 0.55 -2.5 688,727 + HMPREF1078_RS02860 0.55 -1.9 688,728 - HMPREF1078_RS02860 0.55 -1.3 688,732 - HMPREF1078_RS02860 0.55 +1.5 688,784 + HMPREF1078_RS02860 0.60 -1.6 688,785 - HMPREF1078_RS02860 0.60 +2.1 688,923 - HMPREF1078_RS02860 0.71 +1.0 688,935 - HMPREF1078_RS02860 0.72 +0.6 688,985 - HMPREF1078_RS02860 0.76 -0.9 688,985 - HMPREF1078_RS02860 0.76 -1.2 688,985 - HMPREF1078_RS02860 0.76 -1.6 689,110 - HMPREF1078_RS02860 0.87 -1.5 689,115 + HMPREF1078_RS02860 0.87 +0.1 689,164 - -1.5 689,173 - +0.6 689,208 - +1.0 689,208 - +3.1 689,259 - -0.0 689,269 - +1.3 689,269 - +0.1 689,273 - +1.2 689,289 - -0.6 689,340 - HMPREF1078_RS02865 0.12 -1.9 689,379 - HMPREF1078_RS02865 0.21 +2.6 689,379 - HMPREF1078_RS02865 0.21 -0.3 689,379 - HMPREF1078_RS02865 0.21 +1.1 689,488 - HMPREF1078_RS02865 0.46 -0.2 689,617 - HMPREF1078_RS02865 0.76 +0.6 689,732 + -1.8 689,732 + -0.8 689,733 - -0.5 689,733 - +0.8 689,733 - -2.8 689,750 - +0.3 689,769 - +0.4 689,832 + HMPREF1078_RS02870 0.17 -0.9 689,846 + HMPREF1078_RS02870 0.18 +0.3 689,936 + HMPREF1078_RS02870 0.31 -1.2 689,942 + HMPREF1078_RS02870 0.31 +0.4 689,942 + HMPREF1078_RS02870 0.31 +0.3 689,943 - HMPREF1078_RS02870 0.32 -0.0 689,943 - HMPREF1078_RS02870 0.32 -1.8 689,943 - HMPREF1078_RS02870 0.32 +0.3 689,966 - HMPREF1078_RS02870 0.35 -1.4 689,974 + HMPREF1078_RS02870 0.36 -0.5 690,028 - HMPREF1078_RS02870 0.43 -0.5 690,028 - HMPREF1078_RS02870 0.43 +0.9 690,051 + HMPREF1078_RS02870 0.46 -2.1 690,138 + HMPREF1078_RS02870 0.58 -1.1 690,284 + HMPREF1078_RS02870 0.78 -1.1 690,338 + HMPREF1078_RS02870 0.85 -1.9 690,371 - HMPREF1078_RS02870 0.90 +1.6 690,371 - HMPREF1078_RS02870 0.90 -1.4 690,406 - +2.1 690,426 + +1.6 690,427 - +0.8 690,432 - -0.4 690,438 - -0.5 690,438 - -0.3 690,450 - -0.6 690,469 - -1.4 690,469 - -2.2 690,613 - -0.2 690,766 - +0.8 690,766 - -2.1 690,766 - +0.5 690,766 - -1.0 690,766 - +0.1 690,809 - -0.6 690,809 - +1.2 690,856 + -0.4 690,872 - -0.4 690,922 + +0.3 690,927 - -1.1 690,992 - -1.9 690,994 + +2.6 690,995 - +0.2 691,030 + HMPREF1078_RS02875 0.11 -2.1 691,031 - HMPREF1078_RS02875 0.11 -0.4 691,084 - HMPREF1078_RS02875 0.23 +1.3 691,166 + HMPREF1078_RS02875 0.41 +1.3 691,171 - HMPREF1078_RS02875 0.43 +1.4 691,183 + HMPREF1078_RS02875 0.45 -2.0 691,183 + HMPREF1078_RS02875 0.45 -0.8 691,184 - HMPREF1078_RS02875 0.46 -0.1 691,184 - HMPREF1078_RS02875 0.46 +0.2 691,228 + HMPREF1078_RS02875 0.56 -1.7 691,245 + HMPREF1078_RS02875 0.59 +1.6 691,257 + HMPREF1078_RS02875 0.62 -0.2 691,257 - HMPREF1078_RS02875 0.62 -0.1 691,258 - HMPREF1078_RS02875 0.62 +4.1 691,421 + +0.9 691,422 - +1.4
Or see this region's nucleotide sequence