Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02505 and HMPREF1078_RS02510 are separated by 98 nucleotides HMPREF1078_RS02510 and HMPREF1078_RS02515 are separated by 12 nucleotides
HMPREF1078_RS02505: HMPREF1078_RS02505 - aldehyde dehydrogenase, at 623,693 to 625,129
_RS02505
HMPREF1078_RS02510: HMPREF1078_RS02510 - NAD(P)H-dependent oxidoreductase subunit E, at 625,228 to 625,716
_RS02510
HMPREF1078_RS02515: HMPREF1078_RS02515 - NADH-dependent [FeFe] hydrogenase, group A6, at 625,729 to 627,519
_RS02515
Position (kb) 623
624
625
626 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 622.764 kb on + strand at 622.978 kb on - strand at 622.978 kb on - strand at 622.980 kb on + strand at 622.981 kb on - strand at 622.986 kb on - strand at 623.010 kb on - strand at 623.071 kb on - strand at 623.179 kb on - strand at 623.179 kb on - strand at 623.187 kb on - strand at 623.187 kb on - strand at 623.239 kb on + strand at 623.240 kb on - strand at 623.240 kb on - strand at 623.240 kb on - strand at 623.245 kb on - strand at 623.252 kb on + strand at 623.253 kb on - strand at 623.253 kb on - strand at 623.327 kb on - strand at 623.346 kb on - strand at 623.354 kb on + strand at 623.355 kb on - strand at 623.392 kb on + strand at 623.392 kb on + strand at 623.396 kb on + strand at 623.396 kb on + strand at 623.425 kb on + strand at 623.426 kb on - strand at 623.426 kb on - strand at 623.442 kb on - strand at 623.444 kb on + strand at 623.445 kb on - strand at 623.448 kb on - strand at 623.453 kb on - strand at 623.480 kb on - strand at 623.497 kb on - strand at 623.513 kb on + strand at 623.514 kb on - strand at 623.534 kb on + strand at 623.569 kb on + strand at 623.569 kb on + strand at 623.570 kb on - strand at 623.577 kb on - strand at 623.577 kb on - strand at 623.629 kb on - strand at 623.690 kb on - strand at 623.730 kb on + strand at 623.731 kb on - strand at 623.731 kb on - strand at 623.731 kb on - strand at 623.763 kb on + strand at 623.764 kb on - strand at 623.773 kb on + strand at 623.773 kb on + strand at 623.787 kb on + strand at 623.787 kb on + strand at 623.789 kb on - strand at 623.822 kb on - strand at 623.822 kb on - strand at 623.878 kb on + strand, within HMPREF1078_RS02505 at 623.947 kb on + strand, within HMPREF1078_RS02505 at 623.948 kb on - strand, within HMPREF1078_RS02505 at 623.950 kb on - strand, within HMPREF1078_RS02505 at 623.950 kb on - strand, within HMPREF1078_RS02505 at 624.004 kb on + strand, within HMPREF1078_RS02505 at 624.015 kb on - strand, within HMPREF1078_RS02505 at 624.015 kb on - strand, within HMPREF1078_RS02505 at 624.024 kb on - strand, within HMPREF1078_RS02505 at 624.025 kb on + strand, within HMPREF1078_RS02505 at 624.026 kb on - strand, within HMPREF1078_RS02505 at 624.091 kb on + strand, within HMPREF1078_RS02505 at 624.197 kb on - strand, within HMPREF1078_RS02505 at 624.240 kb on - strand, within HMPREF1078_RS02505 at 624.318 kb on + strand, within HMPREF1078_RS02505 at 624.319 kb on - strand, within HMPREF1078_RS02505 at 624.375 kb on + strand, within HMPREF1078_RS02505 at 624.376 kb on - strand, within HMPREF1078_RS02505 at 624.412 kb on + strand, within HMPREF1078_RS02505 at 624.413 kb on - strand, within HMPREF1078_RS02505 at 624.480 kb on + strand, within HMPREF1078_RS02505 at 624.481 kb on - strand, within HMPREF1078_RS02505 at 624.538 kb on + strand, within HMPREF1078_RS02505 at 624.538 kb on + strand, within HMPREF1078_RS02505 at 624.538 kb on + strand, within HMPREF1078_RS02505 at 624.539 kb on - strand, within HMPREF1078_RS02505 at 624.539 kb on - strand, within HMPREF1078_RS02505 at 624.539 kb on - strand, within HMPREF1078_RS02505 at 624.566 kb on - strand, within HMPREF1078_RS02505 at 624.580 kb on + strand, within HMPREF1078_RS02505 at 624.581 kb on - strand, within HMPREF1078_RS02505 at 624.738 kb on + strand, within HMPREF1078_RS02505 at 624.771 kb on - strand, within HMPREF1078_RS02505 at 624.865 kb on + strand, within HMPREF1078_RS02505 at 624.865 kb on + strand, within HMPREF1078_RS02505 at 624.866 kb on - strand, within HMPREF1078_RS02505 at 624.866 kb on - strand, within HMPREF1078_RS02505 at 624.866 kb on - strand, within HMPREF1078_RS02505 at 624.867 kb on - strand, within HMPREF1078_RS02505 at 624.989 kb on + strand at 624.990 kb on - strand at 624.990 kb on - strand at 624.990 kb on - strand at 624.991 kb on + strand at 624.992 kb on - strand at 624.992 kb on - strand at 625.016 kb on - strand at 625.016 kb on - strand at 625.113 kb on + strand at 625.143 kb on + strand at 625.145 kb on + strand at 625.229 kb on + strand at 625.231 kb on + strand at 625.231 kb on + strand at 625.232 kb on - strand at 625.232 kb on - strand at 625.250 kb on + strand at 625.264 kb on - strand at 625.447 kb on + strand, within HMPREF1078_RS02510 at 625.452 kb on - strand, within HMPREF1078_RS02510 at 625.452 kb on - strand, within HMPREF1078_RS02510 at 625.479 kb on + strand, within HMPREF1078_RS02510 at 625.479 kb on + strand, within HMPREF1078_RS02510 at 625.479 kb on + strand, within HMPREF1078_RS02510 at 625.480 kb on - strand, within HMPREF1078_RS02510 at 625.484 kb on + strand, within HMPREF1078_RS02510 at 625.507 kb on - strand, within HMPREF1078_RS02510 at 625.607 kb on - strand, within HMPREF1078_RS02510 at 625.628 kb on - strand, within HMPREF1078_RS02510 at 625.656 kb on + strand, within HMPREF1078_RS02510 at 625.762 kb on - strand at 625.792 kb on - strand at 625.835 kb on + strand at 625.857 kb on + strand at 625.857 kb on + strand at 625.859 kb on + strand at 625.860 kb on - strand at 625.977 kb on + strand, within HMPREF1078_RS02515 at 625.978 kb on - strand, within HMPREF1078_RS02515 at 625.999 kb on - strand, within HMPREF1078_RS02515 at 625.999 kb on - strand, within HMPREF1078_RS02515 at 626.015 kb on + strand, within HMPREF1078_RS02515
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 remove 622,764 + +2.6 622,978 - +0.1 622,978 - +1.6 622,980 + +1.4 622,981 - +0.4 622,986 - +1.2 623,010 - -0.7 623,071 - +0.1 623,179 - -1.1 623,179 - +0.6 623,187 - +0.5 623,187 - +2.4 623,239 + -3.9 623,240 - +1.0 623,240 - +1.1 623,240 - -2.5 623,245 - +1.0 623,252 + -1.6 623,253 - -1.5 623,253 - +1.0 623,327 - -1.8 623,346 - -2.1 623,354 + -0.0 623,355 - +1.6 623,392 + -0.6 623,392 + +0.8 623,396 + -3.1 623,396 + -1.3 623,425 + +2.3 623,426 - -1.4 623,426 - -1.7 623,442 - +1.3 623,444 + +1.1 623,445 - +0.5 623,448 - -0.2 623,453 - +0.6 623,480 - +0.8 623,497 - +2.4 623,513 + +1.2 623,514 - +0.6 623,534 + +3.6 623,569 + -1.4 623,569 + +2.0 623,570 - -1.3 623,577 - -1.3 623,577 - -1.4 623,629 - -1.4 623,690 - -0.6 623,730 + -3.1 623,731 - -1.5 623,731 - -1.0 623,731 - +2.0 623,763 + -0.7 623,764 - +0.3 623,773 + -1.7 623,773 + -0.2 623,787 + +1.4 623,787 + -0.7 623,789 - +1.2 623,822 - +0.9 623,822 - +1.6 623,878 + HMPREF1078_RS02505 0.13 +2.8 623,947 + HMPREF1078_RS02505 0.18 -0.8 623,948 - HMPREF1078_RS02505 0.18 -0.6 623,950 - HMPREF1078_RS02505 0.18 -0.4 623,950 - HMPREF1078_RS02505 0.18 -1.6 624,004 + HMPREF1078_RS02505 0.22 -2.1 624,015 - HMPREF1078_RS02505 0.22 -0.7 624,015 - HMPREF1078_RS02505 0.22 +0.5 624,024 - HMPREF1078_RS02505 0.23 -1.6 624,025 + HMPREF1078_RS02505 0.23 +0.5 624,026 - HMPREF1078_RS02505 0.23 +0.2 624,091 + HMPREF1078_RS02505 0.28 +1.1 624,197 - HMPREF1078_RS02505 0.35 +0.5 624,240 - HMPREF1078_RS02505 0.38 +1.2 624,318 + HMPREF1078_RS02505 0.43 -1.3 624,319 - HMPREF1078_RS02505 0.44 +0.5 624,375 + HMPREF1078_RS02505 0.47 -2.1 624,376 - HMPREF1078_RS02505 0.48 -1.8 624,412 + HMPREF1078_RS02505 0.50 -0.4 624,413 - HMPREF1078_RS02505 0.50 -0.2 624,480 + HMPREF1078_RS02505 0.55 +1.5 624,481 - HMPREF1078_RS02505 0.55 +1.2 624,538 + HMPREF1078_RS02505 0.59 -0.4 624,538 + HMPREF1078_RS02505 0.59 -0.1 624,538 + HMPREF1078_RS02505 0.59 +1.5 624,539 - HMPREF1078_RS02505 0.59 -0.6 624,539 - HMPREF1078_RS02505 0.59 -0.4 624,539 - HMPREF1078_RS02505 0.59 +0.9 624,566 - HMPREF1078_RS02505 0.61 -1.2 624,580 + HMPREF1078_RS02505 0.62 +0.3 624,581 - HMPREF1078_RS02505 0.62 -1.7 624,738 + HMPREF1078_RS02505 0.73 +1.6 624,771 - HMPREF1078_RS02505 0.75 +0.6 624,865 + HMPREF1078_RS02505 0.82 +2.0 624,865 + HMPREF1078_RS02505 0.82 +2.6 624,866 - HMPREF1078_RS02505 0.82 -0.7 624,866 - HMPREF1078_RS02505 0.82 +0.9 624,866 - HMPREF1078_RS02505 0.82 -0.4 624,867 - HMPREF1078_RS02505 0.82 -0.3 624,989 + +2.6 624,990 - -1.9 624,990 - +1.4 624,990 - -0.6 624,991 + -0.1 624,992 - +1.6 624,992 - +1.2 625,016 - -0.2 625,016 - +0.2 625,113 + -0.4 625,143 + -0.6 625,145 + +2.1 625,229 + +1.2 625,231 + +2.4 625,231 + -1.7 625,232 - +1.9 625,232 - +0.3 625,250 + +1.2 625,264 - +0.6 625,447 + HMPREF1078_RS02510 0.45 +0.4 625,452 - HMPREF1078_RS02510 0.46 -0.5 625,452 - HMPREF1078_RS02510 0.46 +0.6 625,479 + HMPREF1078_RS02510 0.51 +1.6 625,479 + HMPREF1078_RS02510 0.51 +0.8 625,479 + HMPREF1078_RS02510 0.51 +1.4 625,480 - HMPREF1078_RS02510 0.52 +3.2 625,484 + HMPREF1078_RS02510 0.52 -1.3 625,507 - HMPREF1078_RS02510 0.57 +1.0 625,607 - HMPREF1078_RS02510 0.78 +1.3 625,628 - HMPREF1078_RS02510 0.82 -0.7 625,656 + HMPREF1078_RS02510 0.88 +0.4 625,762 - -1.2 625,792 - -0.1 625,835 + +1.6 625,857 + +0.2 625,857 + -1.0 625,859 + +2.2 625,860 - +0.6 625,977 + HMPREF1078_RS02515 0.14 -2.7 625,978 - HMPREF1078_RS02515 0.14 +0.8 625,999 - HMPREF1078_RS02515 0.15 -0.4 625,999 - HMPREF1078_RS02515 0.15 -0.2 626,015 + HMPREF1078_RS02515 0.16 +0.4
Or see this region's nucleotide sequence