Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01940 and HMPREF1078_RS01945 are separated by 16 nucleotides HMPREF1078_RS01945 and HMPREF1078_RS01950 are separated by 2 nucleotides HMPREF1078_RS01950 and HMPREF1078_RS01955 are separated by 12 nucleotides HMPREF1078_RS01955 and HMPREF1078_RS01960 are separated by 168 nucleotides
HMPREF1078_RS01940: HMPREF1078_RS01940 - 2-oxo acid dehydrogenase subunit E2, at 481,742 to 483,103
_RS01940
HMPREF1078_RS01945: HMPREF1078_RS01945 - lipoate--protein ligase family protein, at 483,120 to 483,860
_RS01945
HMPREF1078_RS01950: HMPREF1078_RS01950 - dihydrolipoyl dehydrogenase, at 483,863 to 485,212
_RS01950
HMPREF1078_RS01955: HMPREF1078_RS01955 - nitroreductase family protein, at 485,225 to 485,827
_RS01955
HMPREF1078_RS01960: HMPREF1078_RS01960 - hypothetical protein, at 485,996 to 487,258
_RS01960
Position (kb) 483
484
485
486 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 482.890 kb on + strand, within HMPREF1078_RS01940 at 483.108 kb on - strand at 483.116 kb on + strand at 483.131 kb on + strand at 483.172 kb on - strand at 483.212 kb on - strand, within HMPREF1078_RS01945 at 483.275 kb on + strand, within HMPREF1078_RS01945 at 483.276 kb on - strand, within HMPREF1078_RS01945 at 483.295 kb on + strand, within HMPREF1078_RS01945 at 483.296 kb on - strand, within HMPREF1078_RS01945 at 483.303 kb on + strand, within HMPREF1078_RS01945 at 483.304 kb on - strand, within HMPREF1078_RS01945 at 483.304 kb on - strand, within HMPREF1078_RS01945 at 483.325 kb on - strand, within HMPREF1078_RS01945 at 483.607 kb on - strand, within HMPREF1078_RS01945 at 483.680 kb on + strand, within HMPREF1078_RS01945 at 483.851 kb on + strand at 483.852 kb on - strand at 483.853 kb on + strand at 483.885 kb on - strand at 483.915 kb on - strand at 483.940 kb on + strand at 483.941 kb on - strand at 484.104 kb on - strand, within HMPREF1078_RS01950 at 484.201 kb on + strand, within HMPREF1078_RS01950 at 484.741 kb on - strand, within HMPREF1078_RS01950 at 484.748 kb on - strand, within HMPREF1078_RS01950 at 484.775 kb on + strand, within HMPREF1078_RS01950 at 484.776 kb on - strand, within HMPREF1078_RS01950 at 484.838 kb on + strand, within HMPREF1078_RS01950 at 485.043 kb on - strand, within HMPREF1078_RS01950 at 485.056 kb on - strand, within HMPREF1078_RS01950 at 485.077 kb on + strand, within HMPREF1078_RS01950 at 485.077 kb on + strand, within HMPREF1078_RS01950 at 485.190 kb on - strand at 485.190 kb on - strand at 485.350 kb on - strand, within HMPREF1078_RS01955 at 485.352 kb on - strand, within HMPREF1078_RS01955 at 485.374 kb on + strand, within HMPREF1078_RS01955 at 485.375 kb on - strand, within HMPREF1078_RS01955 at 485.377 kb on - strand, within HMPREF1078_RS01955 at 485.482 kb on - strand, within HMPREF1078_RS01955 at 485.570 kb on + strand, within HMPREF1078_RS01955 at 485.664 kb on - strand, within HMPREF1078_RS01955 at 485.672 kb on + strand, within HMPREF1078_RS01955 at 485.729 kb on + strand, within HMPREF1078_RS01955 at 485.730 kb on - strand, within HMPREF1078_RS01955 at 485.781 kb on + strand at 485.930 kb on + strand at 486.043 kb on - strand at 486.044 kb on - strand at 486.072 kb on + strand at 486.208 kb on - strand, within HMPREF1078_RS01960
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 remove 482,890 + HMPREF1078_RS01940 0.84 -1.5 483,108 - +0.8 483,116 + +0.3 483,131 + +0.3 483,172 - +1.1 483,212 - HMPREF1078_RS01945 0.12 -1.8 483,275 + HMPREF1078_RS01945 0.21 -1.5 483,276 - HMPREF1078_RS01945 0.21 +4.2 483,295 + HMPREF1078_RS01945 0.24 +1.0 483,296 - HMPREF1078_RS01945 0.24 +1.2 483,303 + HMPREF1078_RS01945 0.25 +0.7 483,304 - HMPREF1078_RS01945 0.25 -1.6 483,304 - HMPREF1078_RS01945 0.25 +2.3 483,325 - HMPREF1078_RS01945 0.28 +1.7 483,607 - HMPREF1078_RS01945 0.66 +1.7 483,680 + HMPREF1078_RS01945 0.76 -1.0 483,851 + -1.3 483,852 - +1.7 483,853 + +0.7 483,885 - +0.3 483,915 - +0.5 483,940 + -0.8 483,941 - -2.0 484,104 - HMPREF1078_RS01950 0.18 -1.1 484,201 + HMPREF1078_RS01950 0.25 -1.3 484,741 - HMPREF1078_RS01950 0.65 +0.3 484,748 - HMPREF1078_RS01950 0.66 -1.9 484,775 + HMPREF1078_RS01950 0.68 +0.5 484,776 - HMPREF1078_RS01950 0.68 -1.9 484,838 + HMPREF1078_RS01950 0.72 -2.0 485,043 - HMPREF1078_RS01950 0.87 -0.6 485,056 - HMPREF1078_RS01950 0.88 -0.2 485,077 + HMPREF1078_RS01950 0.90 -0.2 485,077 + HMPREF1078_RS01950 0.90 +1.1 485,190 - +1.6 485,190 - +0.8 485,350 - HMPREF1078_RS01955 0.21 +0.8 485,352 - HMPREF1078_RS01955 0.21 -0.2 485,374 + HMPREF1078_RS01955 0.25 +3.0 485,375 - HMPREF1078_RS01955 0.25 +0.6 485,377 - HMPREF1078_RS01955 0.25 +0.0 485,482 - HMPREF1078_RS01955 0.43 +1.5 485,570 + HMPREF1078_RS01955 0.57 -2.4 485,664 - HMPREF1078_RS01955 0.73 +0.3 485,672 + HMPREF1078_RS01955 0.74 +1.4 485,729 + HMPREF1078_RS01955 0.84 -0.7 485,730 - HMPREF1078_RS01955 0.84 +1.9 485,781 + +0.8 485,930 + +1.3 486,043 - +1.4 486,044 - -0.5 486,072 + -0.6 486,208 - HMPREF1078_RS01960 0.17 -1.9
Or see this region's nucleotide sequence