Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS30355

Experiment: Bas05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS01695 and ECOLIN_RS30355 are separated by 198 nucleotidesECOLIN_RS30355 and ECOLIN_RS01705 are separated by 367 nucleotides ECOLIN_RS01695: ECOLIN_RS01695 - HlyD family type I secretion periplasmic adaptor subunit, at 339,720 to 340,967 _RS01695 ECOLIN_RS30355: ECOLIN_RS30355 - hypothetical protein, at 341,166 to 341,975 _RS30355 ECOLIN_RS01705: ECOLIN_RS01705 - hypothetical protein, at 342,343 to 344,277 _RS01705 Position (kb) 341 342Strain fitness (log2 ratio) -1 0 1at 340.386 kb on - strand, within ECOLIN_RS01695at 341.330 kb on - strand, within ECOLIN_RS30355at 341.423 kb on + strand, within ECOLIN_RS30355at 341.426 kb on + strand, within ECOLIN_RS30355at 342.360 kb on + strandat 342.360 kb on + strandat 342.361 kb on - strandat 342.554 kb on - strand, within ECOLIN_RS01705at 342.771 kb on + strand, within ECOLIN_RS01705

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
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340,386 - ECOLIN_RS01695 0.53 -0.0
341,330 - ECOLIN_RS30355 0.20 +0.2
341,423 + ECOLIN_RS30355 0.32 -0.1
341,426 + ECOLIN_RS30355 0.32 +0.6
342,360 + +0.6
342,360 + -0.1
342,361 - +0.1
342,554 - ECOLIN_RS01705 0.11 +0.1
342,771 + ECOLIN_RS01705 0.22 +0.4

Or see this region's nucleotide sequence