Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS17380

Experiment: Bas05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS17375 and ECOLIN_RS17380 are separated by 72 nucleotidesECOLIN_RS17380 and ECOLIN_RS17385 are separated by 41 nucleotidesECOLIN_RS17385 and ECOLIN_RS17390 are separated by 10 nucleotides ECOLIN_RS17375: ECOLIN_RS17375 - Ldh family oxidoreductase, at 3,500,356 to 3,501,366 _RS17375 ECOLIN_RS17380: ECOLIN_RS17380 - TRAP transporter substrate-binding protein, at 3,501,439 to 3,502,422 _RS17380 ECOLIN_RS17385: ECOLIN_RS17385 - TRAP transporter small permease, at 3,502,464 to 3,502,946 _RS17385 ECOLIN_RS17390: ECOLIN_RS17390 - TRAP transporter large permease subunit, at 3,502,957 to 3,504,261 _RS17390 Position (kb) 3501 3502 3503Strain fitness (log2 ratio) -1 0 1at 3500.633 kb on + strand, within ECOLIN_RS17375at 3500.634 kb on - strand, within ECOLIN_RS17375at 3501.695 kb on + strand, within ECOLIN_RS17380at 3502.027 kb on + strand, within ECOLIN_RS17380at 3502.357 kb on + strandat 3502.416 kb on + strandat 3502.416 kb on + strandat 3502.420 kb on + strandat 3502.529 kb on + strand, within ECOLIN_RS17385at 3503.268 kb on + strand, within ECOLIN_RS17390at 3503.268 kb on + strand, within ECOLIN_RS17390at 3503.343 kb on + strand, within ECOLIN_RS17390

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
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3,500,633 + ECOLIN_RS17375 0.27 +0.1
3,500,634 - ECOLIN_RS17375 0.27 +0.1
3,501,695 + ECOLIN_RS17380 0.26 -0.8
3,502,027 + ECOLIN_RS17380 0.60 -0.9
3,502,357 + -0.1
3,502,416 + +0.3
3,502,416 + +0.1
3,502,420 + +0.3
3,502,529 + ECOLIN_RS17385 0.13 -0.6
3,503,268 + ECOLIN_RS17390 0.24 +0.3
3,503,268 + ECOLIN_RS17390 0.24 -0.5
3,503,343 + ECOLIN_RS17390 0.30 -0.5

Or see this region's nucleotide sequence