Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS16285

Experiment: Bas05

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECOLIN_RS16275 and ECOLIN_RS16280 are separated by 0 nucleotidesECOLIN_RS16280 and ECOLIN_RS16285 overlap by 13 nucleotidesECOLIN_RS16285 and ECOLIN_RS16290 overlap by 7 nucleotidesECOLIN_RS16290 and ECOLIN_RS16295 overlap by 29 nucleotides ECOLIN_RS16275: ECOLIN_RS16275 - ECF transporter S component, at 3,301,548 to 3,302,126 _RS16275 ECOLIN_RS16280: ECOLIN_RS16280 - energy-coupling factor transporter transmembrane component T, at 3,302,127 to 3,302,834 _RS16280 ECOLIN_RS16285: ECOLIN_RS16285 - energy-coupling factor ABC transporter ATP-binding protein, at 3,302,822 to 3,303,499 _RS16285 ECOLIN_RS16290: ECOLIN_RS16290 - sulfate/molybdate ABC transporter ATP-binding protein, at 3,303,493 to 3,304,170 _RS16290 ECOLIN_RS16295: ECOLIN_RS16295 - nucleoside/nucleotide kinase family protein, at 3,304,142 to 3,304,855 _RS16295 Position (kb) 3302 3303 3304Strain fitness (log2 ratio) -2 -1 0 1at 3301.872 kb on - strand, within ECOLIN_RS16275at 3302.238 kb on - strand, within ECOLIN_RS16280at 3302.271 kb on + strand, within ECOLIN_RS16280at 3302.271 kb on + strand, within ECOLIN_RS16280at 3302.272 kb on - strand, within ECOLIN_RS16280at 3302.272 kb on - strand, within ECOLIN_RS16280at 3302.384 kb on + strand, within ECOLIN_RS16280at 3302.384 kb on + strand, within ECOLIN_RS16280at 3302.442 kb on + strand, within ECOLIN_RS16280at 3302.442 kb on + strand, within ECOLIN_RS16280at 3302.620 kb on + strand, within ECOLIN_RS16280at 3302.732 kb on + strand, within ECOLIN_RS16280at 3302.761 kb on + strand, within ECOLIN_RS16280at 3302.789 kb on - strandat 3302.827 kb on + strandat 3303.332 kb on - strand, within ECOLIN_RS16285at 3303.332 kb on - strand, within ECOLIN_RS16285at 3303.512 kb on + strandat 3303.840 kb on + strand, within ECOLIN_RS16290at 3304.130 kb on + strandat 3304.131 kb on - strandat 3304.181 kb on + strandat 3304.182 kb on - strandat 3304.249 kb on - strand, within ECOLIN_RS16295

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
remove
3,301,872 - ECOLIN_RS16275 0.56 +0.1
3,302,238 - ECOLIN_RS16280 0.16 -2.2
3,302,271 + ECOLIN_RS16280 0.20 -0.0
3,302,271 + ECOLIN_RS16280 0.20 +0.1
3,302,272 - ECOLIN_RS16280 0.20 +0.5
3,302,272 - ECOLIN_RS16280 0.20 -0.2
3,302,384 + ECOLIN_RS16280 0.36 -0.2
3,302,384 + ECOLIN_RS16280 0.36 +0.2
3,302,442 + ECOLIN_RS16280 0.44 +0.9
3,302,442 + ECOLIN_RS16280 0.44 -1.6
3,302,620 + ECOLIN_RS16280 0.70 +0.1
3,302,732 + ECOLIN_RS16280 0.85 -0.9
3,302,761 + ECOLIN_RS16280 0.90 -0.1
3,302,789 - +0.1
3,302,827 + +0.2
3,303,332 - ECOLIN_RS16285 0.75 +0.1
3,303,332 - ECOLIN_RS16285 0.75 -1.0
3,303,512 + +0.4
3,303,840 + ECOLIN_RS16290 0.51 +0.1
3,304,130 + +1.3
3,304,131 - +0.4
3,304,181 + +0.2
3,304,182 - +1.0
3,304,249 - ECOLIN_RS16295 0.15 -0.1

Or see this region's nucleotide sequence