Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS14035

Experiment: Bas05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS14030 and ECOLIN_RS14035 overlap by 4 nucleotidesECOLIN_RS14035 and ECOLIN_RS14040 overlap by 4 nucleotidesECOLIN_RS14040 and ECOLIN_RS14045 overlap by 26 nucleotides ECOLIN_RS14030: ECOLIN_RS14030 - phosphate acetyltransferase, at 2,815,312 to 2,816,328 _RS14030 ECOLIN_RS14035: ECOLIN_RS14035 - ethanolamine utilization cob(I)yrinic acid a,c-diamide adenosyltransferase EutT, at 2,816,325 to 2,817,128 _RS14035 ECOLIN_RS14040: ECOLIN_RS14040 - ethanolamine utilization acetate kinase EutQ, at 2,817,125 to 2,817,826 _RS14040 ECOLIN_RS14045: ECOLIN_RS14045 - ethanolamine utilization acetate kinase EutP, at 2,817,801 to 2,818,280 _RS14045 Position (kb) 2816 2817 2818Strain fitness (log2 ratio) -1 0 1at 2817.185 kb on - strandat 2818.073 kb on - strand, within ECOLIN_RS14045

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
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2,817,185 - -0.3
2,818,073 - ECOLIN_RS14045 0.57 -0.6

Or see this region's nucleotide sequence