Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS13550

Experiment: Bas05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS13545 and ECOLIN_RS13550 are separated by 202 nucleotidesECOLIN_RS13550 and ECOLIN_RS13555 overlap by 1 nucleotides ECOLIN_RS13545: ECOLIN_RS13545 - phosphohistidine phosphatase SixA, at 2,710,351 to 2,710,836 _RS13545 ECOLIN_RS13550: ECOLIN_RS13550 - fatty acid oxidation complex subunit alpha FadJ, at 2,711,039 to 2,713,183 _RS13550 ECOLIN_RS13555: ECOLIN_RS13555 - acetyl-CoA C-acyltransferase FadI, at 2,713,183 to 2,714,493 _RS13555 Position (kb) 2711 2712 2713 2714Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2710.300 kb on + strandat 2711.433 kb on + strand, within ECOLIN_RS13550at 2712.453 kb on + strand, within ECOLIN_RS13550at 2713.567 kb on + strand, within ECOLIN_RS13555at 2713.792 kb on - strand, within ECOLIN_RS13555at 2713.982 kb on - strand, within ECOLIN_RS13555

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
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2,710,300 + -0.1
2,711,433 + ECOLIN_RS13550 0.18 -0.0
2,712,453 + ECOLIN_RS13550 0.66 +3.1
2,713,567 + ECOLIN_RS13555 0.29 +0.6
2,713,792 - ECOLIN_RS13555 0.46 +0.3
2,713,982 - ECOLIN_RS13555 0.61 -2.6

Or see this region's nucleotide sequence