Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS12180 and ECOLIN_RS12185 overlap by 4 nucleotides ECOLIN_RS12185 and ECOLIN_RS12190 overlap by 4 nucleotides ECOLIN_RS12190 and ECOLIN_RS31520 are separated by 217 nucleotides ECOLIN_RS31520 and ECOLIN_RS31525 are separated by 271 nucleotides ECOLIN_RS31525 and ECOLIN_RS12195 are separated by 278 nucleotides
ECOLIN_RS12180: ECOLIN_RS12180 - protein kinase YegI, at 2,409,543 to 2,411,483
_RS12180
ECOLIN_RS12185: ECOLIN_RS12185 - protein-serine/threonine phosphatase PphC, at 2,411,480 to 2,412,241
_RS12185
ECOLIN_RS12190: ECOLIN_RS12190 - VWA domain-containing protein, at 2,412,238 to 2,412,897
_RS12190
ECOLIN_RS31520: ECOLIN_RS31520 - type I toxin-antitoxin system Ibs family toxin, at 2,413,115 to 2,413,171
_RS31520
ECOLIN_RS31525: ECOLIN_RS31525 - type I toxin-antitoxin system Ibs family toxin, at 2,413,443 to 2,413,499
_RS31525
ECOLIN_RS12195: ECOLIN_RS12195 - multidrug efflux RND transporter subunit MdtA, at 2,413,778 to 2,415,025
_RS12195
Position (kb) 2412
2413 Strain fitness (log2 ratio) -1
0
1 at 2412.040 kb on - strand, within ECOLIN_RS12185 at 2412.920 kb on + strand at 2413.116 kb on + strand at 2413.444 kb on + strand at 2413.444 kb on + strand at 2413.467 kb on + strand, within ECOLIN_RS31525
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 2,412,040 - ECOLIN_RS12185 0.73 +0.8 2,412,920 + +0.0 2,413,116 + -0.8 2,413,444 + +0.4 2,413,444 + +0.3 2,413,467 + ECOLIN_RS31525 0.42 +0.3
Or see this region's nucleotide sequence