Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS07895

Experiment: Bas05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS07885 and ECOLIN_RS07890 overlap by 14 nucleotidesECOLIN_RS07890 and ECOLIN_RS07895 are separated by 30 nucleotidesECOLIN_RS07895 and ECOLIN_RS07900 are separated by 18 nucleotidesECOLIN_RS07900 and ECOLIN_RS07905 are separated by 9 nucleotides ECOLIN_RS07885: ECOLIN_RS07885 - sugar ABC transporter permease, at 1,541,391 to 1,542,272 _RS07885 ECOLIN_RS07890: ECOLIN_RS07890 - carbohydrate ABC transporter permease, at 1,542,259 to 1,543,101 _RS07890 ECOLIN_RS07895: ECOLIN_RS07895 - zinc-binding alcohol dehydrogenase, at 1,543,132 to 1,544,184 _RS07895 ECOLIN_RS07900: ECOLIN_RS07900 - sugar phosphate isomerase/epimerase, at 1,544,203 to 1,544,991 _RS07900 ECOLIN_RS07905: ECOLIN_RS07905 - Gfo/Idh/MocA family oxidoreductase, at 1,545,001 to 1,546,056 _RS07905 Position (kb) 1543 1544 1545Strain fitness (log2 ratio) -1 0 1at 1542.983 kb on - strand, within ECOLIN_RS07890at 1543.129 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
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1,542,983 - ECOLIN_RS07890 0.86 -0.8
1,543,129 + +0.2

Or see this region's nucleotide sequence