Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS05815

Experiment: Bas05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS05810 and ECOLIN_RS05815 are separated by 18 nucleotidesECOLIN_RS05815 and ECOLIN_RS05820 are separated by 263 nucleotides ECOLIN_RS05810: ECOLIN_RS05810 - TonB-dependent receptor, at 1,186,719 to 1,188,689 _RS05810 ECOLIN_RS05815: ECOLIN_RS05815 - DUF4198 domain-containing protein, at 1,188,708 to 1,189,499 _RS05815 ECOLIN_RS05820: ECOLIN_RS05820 - GTP-binding protein, at 1,189,763 to 1,190,962 _RS05820 Position (kb) 1188 1189 1190Strain fitness (log2 ratio) -1 0 1at 1188.267 kb on + strand, within ECOLIN_RS05810at 1188.270 kb on - strand, within ECOLIN_RS05810at 1188.996 kb on + strand, within ECOLIN_RS05815at 1189.729 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
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1,188,267 + ECOLIN_RS05810 0.79 -0.4
1,188,270 - ECOLIN_RS05810 0.79 -1.7
1,188,996 + ECOLIN_RS05815 0.36 +0.3
1,189,729 - -0.4

Or see this region's nucleotide sequence