Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS11540

Experiment: Bas05

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECOLIN_RS11535 and ECOLIN_RS11540 overlap by 8 nucleotidesECOLIN_RS11540 and ECOLIN_RS11545 are separated by 10 nucleotides ECOLIN_RS11535: ECOLIN_RS11535 - colibactin biosynthesis amidase ClbL, at 2,250,943 to 2,252,406 _RS11535 ECOLIN_RS11540: ECOLIN_RS11540 - colibactin hybrid non-ribosomal peptide synthetase/type I polyketide synthase ClbK, at 2,252,399 to 2,258,863 _RS11540 ECOLIN_RS11545: ECOLIN_RS11545 - colibactin non-ribosomal peptide synthetase ClbJ, at 2,258,874 to 2,265,374 _RS11545 Position (kb) 2252 2253 2254 2255 2256 2257 2258 2259Strain fitness (log2 ratio) -1 0 1at 2252.307 kb on + strandat 2252.880 kb on + strandat 2255.357 kb on - strand, within ECOLIN_RS11540at 2255.557 kb on + strand, within ECOLIN_RS11540at 2256.202 kb on - strand, within ECOLIN_RS11540at 2256.358 kb on + strand, within ECOLIN_RS11540at 2257.547 kb on + strand, within ECOLIN_RS11540at 2258.857 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
remove
2,252,307 + +0.1
2,252,880 + -0.0
2,255,357 - ECOLIN_RS11540 0.46 -0.0
2,255,557 + ECOLIN_RS11540 0.49 -0.3
2,256,202 - ECOLIN_RS11540 0.59 +0.2
2,256,358 + ECOLIN_RS11540 0.61 -0.6
2,257,547 + ECOLIN_RS11540 0.80 -0.3
2,258,857 - -0.0

Or see this region's nucleotide sequence