Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS04235 and ECOLIN_RS04240 are separated by 2 nucleotides ECOLIN_RS04240 and ECOLIN_RS04245 are separated by 228 nucleotides ECOLIN_RS04245 and ECOLIN_RS04250 are separated by 232 nucleotides ECOLIN_RS04250 and ECOLIN_RS04255 are separated by 103 nucleotides
ECOLIN_RS04235: ECOLIN_RS04235 - secretion protein HlyD, at 856,705 to 857,700
_RS04235
ECOLIN_RS04240: ECOLIN_RS04240 - DNA-binding transcriptional regulator CecR, at 857,703 to 858,374
_RS04240
ECOLIN_RS04245: ECOLIN_RS04245 - ATP-dependent RNA helicase RhlE, at 858,603 to 859,964
_RS04245
ECOLIN_RS04250: ECOLIN_RS04250 - NADAR domain-containing protein, at 860,197 to 860,397
_RS04250
ECOLIN_RS04255: ECOLIN_RS04255 - ATP-dependent DNA helicase DinG, at 860,501 to 862,651
_RS04255
Position (kb) 858
859
860 Strain fitness (log2 ratio) -1
0
1 at 857.663 kb on - strand at 857.666 kb on - strand at 857.666 kb on - strand at 858.227 kb on - strand, within ECOLIN_RS04240 at 858.895 kb on - strand, within ECOLIN_RS04245 at 859.185 kb on - strand, within ECOLIN_RS04245 at 859.316 kb on + strand, within ECOLIN_RS04245 at 859.400 kb on + strand, within ECOLIN_RS04245 at 859.587 kb on + strand, within ECOLIN_RS04245 at 859.587 kb on + strand, within ECOLIN_RS04245 at 859.588 kb on - strand, within ECOLIN_RS04245
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 857,663 - -0.4 857,666 - -0.9 857,666 - +0.3 858,227 - ECOLIN_RS04240 0.78 -1.3 858,895 - ECOLIN_RS04245 0.21 +0.2 859,185 - ECOLIN_RS04245 0.43 -0.7 859,316 + ECOLIN_RS04245 0.52 +1.6 859,400 + ECOLIN_RS04245 0.59 +0.6 859,587 + ECOLIN_RS04245 0.72 +0.5 859,587 + ECOLIN_RS04245 0.72 +0.1 859,588 - ECOLIN_RS04245 0.72 -0.4
Or see this region's nucleotide sequence