Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0114

Experiment: MoYLS4 with DMSO 7.5%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0113 and DVUA0114 overlap by 8 nucleotidesDVUA0114 and DVUA0115 are separated by 25 nucleotidesDVUA0115 and DVUA0116 are separated by 194 nucleotidesDVUA0116 and DORF2111 are separated by 42 nucleotides DVUA0113: DVUA0113 - type III secretion protein, YscD family (TIGR), at 151,240 to 153,048 DVUA0113 DVUA0114: DVUA0114 - hypothetical protein (TIGR), at 153,041 to 153,250 DVUA0114 DVUA0115: DVUA0115 - type III secretion system protein, YscF family (TIGR), at 153,276 to 153,527 DVUA0115 DVUA0116: DVUA0116 - conserved hypothetical protein (TIGR), at 153,722 to 154,087 DVUA0116 DORF2111: DORF2111 - SEED: FIG00602408: hypothetical protein, at 154,130 to 154,945 DORF2111 Position (kb) 153 154Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 152.063 kb on + strand, within DVUA0113at 152.073 kb on + strand, within DVUA0113at 152.100 kb on + strand, within DVUA0113at 152.154 kb on + strand, within DVUA0113at 152.162 kb on - strand, within DVUA0113at 152.205 kb on + strand, within DVUA0113at 152.208 kb on - strand, within DVUA0113at 152.211 kb on + strand, within DVUA0113at 152.211 kb on + strand, within DVUA0113at 152.219 kb on - strand, within DVUA0113at 152.451 kb on + strand, within DVUA0113at 152.487 kb on + strand, within DVUA0113at 152.495 kb on - strand, within DVUA0113at 152.516 kb on - strand, within DVUA0113at 152.516 kb on - strand, within DVUA0113at 152.610 kb on - strand, within DVUA0113at 152.612 kb on - strand, within DVUA0113at 152.829 kb on + strand, within DVUA0113at 152.829 kb on - strand, within DVUA0113at 152.862 kb on + strand, within DVUA0113at 152.879 kb on + strandat 152.887 kb on - strandat 152.893 kb on + strandat 152.893 kb on + strandat 153.027 kb on + strandat 153.134 kb on - strand, within DVUA0114at 153.134 kb on - strand, within DVUA0114at 153.134 kb on - strand, within DVUA0114at 153.238 kb on - strandat 153.238 kb on - strandat 153.298 kb on + strandat 153.325 kb on - strand, within DVUA0115at 153.327 kb on + strand, within DVUA0115at 153.350 kb on + strand, within DVUA0115at 153.350 kb on + strand, within DVUA0115at 153.368 kb on - strand, within DVUA0115at 153.393 kb on + strand, within DVUA0115at 153.398 kb on + strand, within DVUA0115at 153.411 kb on - strand, within DVUA0115at 153.411 kb on - strand, within DVUA0115at 153.411 kb on - strand, within DVUA0115at 153.446 kb on - strand, within DVUA0115at 153.446 kb on - strand, within DVUA0115at 153.451 kb on - strand, within DVUA0115at 153.451 kb on - strand, within DVUA0115at 153.482 kb on + strand, within DVUA0115at 153.522 kb on + strandat 153.522 kb on + strandat 153.530 kb on - strandat 153.530 kb on - strandat 153.539 kb on + strandat 153.557 kb on + strandat 153.670 kb on + strandat 153.670 kb on + strandat 153.699 kb on - strandat 153.712 kb on + strandat 153.720 kb on - strandat 153.808 kb on + strand, within DVUA0116at 153.816 kb on - strand, within DVUA0116at 153.871 kb on - strand, within DVUA0116at 153.872 kb on - strand, within DVUA0116at 153.967 kb on - strand, within DVUA0116at 153.973 kb on + strand, within DVUA0116at 153.974 kb on + strand, within DVUA0116at 154.003 kb on + strand, within DVUA0116at 154.027 kb on + strand, within DVUA0116at 154.085 kb on - strandat 154.167 kb on + strandat 154.210 kb on + strandat 154.245 kb on + strand, within DORF2111

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 7.5%
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152,063 + DVUA0113 0.45 +0.1
152,073 + DVUA0113 0.46 -0.6
152,100 + DVUA0113 0.48 -0.1
152,154 + DVUA0113 0.51 -0.6
152,162 - DVUA0113 0.51 +0.6
152,205 + DVUA0113 0.53 -0.1
152,208 - DVUA0113 0.54 +0.1
152,211 + DVUA0113 0.54 -1.5
152,211 + DVUA0113 0.54 -0.4
152,219 - DVUA0113 0.54 +0.1
152,451 + DVUA0113 0.67 -1.0
152,487 + DVUA0113 0.69 -1.1
152,495 - DVUA0113 0.69 +0.3
152,516 - DVUA0113 0.71 -0.2
152,516 - DVUA0113 0.71 +0.2
152,610 - DVUA0113 0.76 +0.1
152,612 - DVUA0113 0.76 +0.0
152,829 + DVUA0113 0.88 +0.2
152,829 - DVUA0113 0.88 -1.0
152,862 + DVUA0113 0.90 -0.9
152,879 + -0.1
152,887 - -0.2
152,893 + +0.2
152,893 + +0.0
153,027 + +0.5
153,134 - DVUA0114 0.44 -0.3
153,134 - DVUA0114 0.44 -1.6
153,134 - DVUA0114 0.44 +0.2
153,238 - -0.2
153,238 - +0.1
153,298 + -0.2
153,325 - DVUA0115 0.19 -0.6
153,327 + DVUA0115 0.20 -0.6
153,350 + DVUA0115 0.29 -0.7
153,350 + DVUA0115 0.29 -0.9
153,368 - DVUA0115 0.37 +0.3
153,393 + DVUA0115 0.46 -0.9
153,398 + DVUA0115 0.48 +0.5
153,411 - DVUA0115 0.54 -0.1
153,411 - DVUA0115 0.54 +0.7
153,411 - DVUA0115 0.54 +0.0
153,446 - DVUA0115 0.67 +1.7
153,446 - DVUA0115 0.67 +0.7
153,451 - DVUA0115 0.69 +0.2
153,451 - DVUA0115 0.69 +0.2
153,482 + DVUA0115 0.82 +0.5
153,522 + -1.4
153,522 + +0.4
153,530 - +0.6
153,530 - -0.1
153,539 + -0.0
153,557 + -0.4
153,670 + +0.5
153,670 + -0.2
153,699 - +2.5
153,712 + -0.1
153,720 - -0.1
153,808 + DVUA0116 0.23 -0.4
153,816 - DVUA0116 0.26 -0.7
153,871 - DVUA0116 0.41 +0.7
153,872 - DVUA0116 0.41 -0.1
153,967 - DVUA0116 0.67 -0.1
153,973 + DVUA0116 0.69 -0.3
153,974 + DVUA0116 0.69 -2.8
154,003 + DVUA0116 0.77 +0.7
154,027 + DVUA0116 0.83 +0.6
154,085 - -0.3
154,167 + +0.3
154,210 + +0.2
154,245 + DORF2111 0.14 +0.2

Or see this region's nucleotide sequence