Experiment: MoYLS4 with DMSO 7.5%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pgpA and rrf2 are separated by 100 nucleotides rrf2 and rrf1 are separated by 3 nucleotides rrf1 and hmcF are separated by 92 nucleotides
DVU0528: pgpA - phosphatidylglycerophosphatase (TIGR), at 601,058 to 601,537
pgpA
DVU0529: rrf2 - Rrf2 protein (voordouw), at 601,638 to 602,090
rrf2
DVU0530: rrf1 - Rrf1 protein (voordouw), at 602,094 to 602,510
rrf1
DVU0531: hmcF - HmcF, 52.7 kd protein in hmc operon (voordouw), at 602,603 to 603,988
hmcF
Position (kb) 602
603 Strain fitness (log2 ratio) -2
-1
0
1 at 601.521 kb on + strand at 601.580 kb on - strand at 601.629 kb on + strand at 601.636 kb on + strand at 601.776 kb on + strand, within rrf2 at 601.791 kb on - strand, within rrf2 at 601.851 kb on + strand, within rrf2 at 601.872 kb on + strand, within rrf2 at 601.872 kb on + strand, within rrf2 at 601.936 kb on + strand, within rrf2 at 602.011 kb on + strand, within rrf2 at 602.021 kb on + strand, within rrf2 at 602.021 kb on + strand, within rrf2 at 602.021 kb on + strand, within rrf2 at 602.085 kb on + strand at 602.087 kb on - strand at 602.143 kb on - strand, within rrf1 at 602.200 kb on - strand, within rrf1 at 602.259 kb on + strand, within rrf1 at 602.353 kb on - strand, within rrf1 at 602.398 kb on - strand, within rrf1 at 602.425 kb on + strand, within rrf1 at 602.440 kb on + strand, within rrf1 at 602.448 kb on - strand, within rrf1 at 602.508 kb on + strand at 602.518 kb on - strand at 602.524 kb on - strand at 602.624 kb on - strand at 602.726 kb on + strand at 602.804 kb on - strand, within hmcF at 603.048 kb on + strand, within hmcF at 603.048 kb on + strand, within hmcF at 603.090 kb on - strand, within hmcF at 603.119 kb on + strand, within hmcF at 603.125 kb on + strand, within hmcF at 603.170 kb on - strand, within hmcF at 603.273 kb on + strand, within hmcF at 603.273 kb on + strand, within hmcF at 603.281 kb on - strand, within hmcF at 603.360 kb on + strand, within hmcF at 603.443 kb on + strand, within hmcF at 603.502 kb on - strand, within hmcF
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 7.5% remove 601,521 + -0.1 601,580 - -0.3 601,629 + +1.0 601,636 + -1.2 601,776 + rrf2 DVU0529 0.30 +1.0 601,791 - rrf2 DVU0529 0.34 -0.1 601,851 + rrf2 DVU0529 0.47 -0.1 601,872 + rrf2 DVU0529 0.52 -1.3 601,872 + rrf2 DVU0529 0.52 -0.2 601,936 + rrf2 DVU0529 0.66 -1.6 602,011 + rrf2 DVU0529 0.82 -1.3 602,021 + rrf2 DVU0529 0.85 -0.4 602,021 + rrf2 DVU0529 0.85 -0.1 602,021 + rrf2 DVU0529 0.85 -1.1 602,085 + +0.4 602,087 - -1.1 602,143 - rrf1 DVU0530 0.12 -0.4 602,200 - rrf1 DVU0530 0.25 -1.1 602,259 + rrf1 DVU0530 0.40 -0.0 602,353 - rrf1 DVU0530 0.62 -0.5 602,398 - rrf1 DVU0530 0.73 -0.2 602,425 + rrf1 DVU0530 0.79 -1.1 602,440 + rrf1 DVU0530 0.83 +0.3 602,448 - rrf1 DVU0530 0.85 -2.7 602,508 + -0.2 602,518 - +0.6 602,524 - +0.1 602,624 - -0.8 602,726 + -0.3 602,804 - hmcF DVU0531 0.15 +0.7 603,048 + hmcF DVU0531 0.32 -1.7 603,048 + hmcF DVU0531 0.32 -1.3 603,090 - hmcF DVU0531 0.35 -1.9 603,119 + hmcF DVU0531 0.37 +0.2 603,125 + hmcF DVU0531 0.38 -0.4 603,170 - hmcF DVU0531 0.41 +0.9 603,273 + hmcF DVU0531 0.48 -0.1 603,273 + hmcF DVU0531 0.48 -0.4 603,281 - hmcF DVU0531 0.49 +0.6 603,360 + hmcF DVU0531 0.55 +0.2 603,443 + hmcF DVU0531 0.61 -0.5 603,502 - hmcF DVU0531 0.65 -1.1
Or see this region's nucleotide sequence