Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0412

Experiment: MoYLS4 with DMSO 7.5%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0411 and DVU0412 are separated by 16 nucleotidesDVU0412 and trk1 are separated by 57 nucleotides DVU0411: DVU0411 - heptosyltransferase family protein (TIGR), at 459,998 to 461,671 DVU0411 DVU0412: DVU0412 - potassium uptake protein TrkA, putative (TIGR), at 461,688 to 462,353 DVU0412 DVU0413: trk1 - potassium uptake protein, TrkH family (TIGR), at 462,411 to 463,748 trk1 Position (kb) 461 462 463Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 460.701 kb on + strand, within DVU0411at 460.709 kb on - strand, within DVU0411at 460.764 kb on + strand, within DVU0411at 460.764 kb on + strand, within DVU0411at 460.769 kb on + strand, within DVU0411at 460.876 kb on - strand, within DVU0411at 460.914 kb on + strand, within DVU0411at 460.922 kb on - strand, within DVU0411at 460.924 kb on - strand, within DVU0411at 460.984 kb on + strand, within DVU0411at 461.049 kb on - strand, within DVU0411at 461.132 kb on + strand, within DVU0411at 461.140 kb on - strand, within DVU0411at 461.165 kb on + strand, within DVU0411at 461.361 kb on - strand, within DVU0411at 461.480 kb on - strand, within DVU0411at 461.504 kb on + strandat 461.512 kb on - strandat 461.521 kb on + strandat 461.539 kb on - strandat 461.634 kb on + strandat 461.816 kb on + strand, within DVU0412at 461.824 kb on - strand, within DVU0412at 461.903 kb on + strand, within DVU0412at 461.965 kb on - strand, within DVU0412at 462.012 kb on - strand, within DVU0412at 462.046 kb on + strand, within DVU0412at 462.046 kb on + strand, within DVU0412at 462.054 kb on - strand, within DVU0412at 462.054 kb on - strand, within DVU0412at 462.054 kb on - strand, within DVU0412at 462.054 kb on - strand, within DVU0412at 462.181 kb on - strand, within DVU0412at 462.239 kb on + strand, within DVU0412at 462.239 kb on + strand, within DVU0412at 462.274 kb on + strand, within DVU0412at 462.329 kb on - strandat 462.360 kb on + strandat 462.368 kb on - strandat 462.591 kb on - strand, within trk1at 462.599 kb on - strand, within trk1at 462.599 kb on - strand, within trk1at 462.599 kb on - strand, within trk1at 462.609 kb on - strand, within trk1at 462.609 kb on - strand, within trk1at 462.653 kb on - strand, within trk1at 462.747 kb on + strand, within trk1at 462.755 kb on - strand, within trk1at 462.784 kb on + strand, within trk1at 462.784 kb on + strand, within trk1at 462.792 kb on - strand, within trk1at 462.792 kb on - strand, within trk1at 462.792 kb on - strand, within trk1at 462.818 kb on + strand, within trk1at 462.897 kb on - strand, within trk1at 462.961 kb on + strand, within trk1at 462.969 kb on - strand, within trk1at 462.969 kb on - strand, within trk1at 462.969 kb on - strand, within trk1at 462.978 kb on - strand, within trk1at 462.996 kb on + strand, within trk1at 463.029 kb on + strand, within trk1at 463.072 kb on - strand, within trk1at 463.087 kb on - strand, within trk1at 463.145 kb on + strand, within trk1at 463.189 kb on - strand, within trk1at 463.302 kb on + strand, within trk1at 463.315 kb on + strand, within trk1at 463.344 kb on - strand, within trk1

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 7.5%
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460,701 + DVU0411 0.42 +0.0
460,709 - DVU0411 0.42 -0.4
460,764 + DVU0411 0.46 -0.9
460,764 + DVU0411 0.46 -0.6
460,769 + DVU0411 0.46 +0.4
460,876 - DVU0411 0.52 -1.1
460,914 + DVU0411 0.55 +0.2
460,922 - DVU0411 0.55 -0.8
460,924 - DVU0411 0.55 +0.7
460,984 + DVU0411 0.59 -0.3
461,049 - DVU0411 0.63 -0.8
461,132 + DVU0411 0.68 +0.0
461,140 - DVU0411 0.68 -0.8
461,165 + DVU0411 0.70 -0.7
461,361 - DVU0411 0.81 +1.5
461,480 - DVU0411 0.89 -0.1
461,504 + +0.8
461,512 - -0.7
461,521 + -0.5
461,539 - -0.5
461,634 + -0.4
461,816 + DVU0412 0.19 -2.0
461,824 - DVU0412 0.20 -1.0
461,903 + DVU0412 0.32 -1.3
461,965 - DVU0412 0.42 -1.2
462,012 - DVU0412 0.49 -0.3
462,046 + DVU0412 0.54 +1.2
462,046 + DVU0412 0.54 -1.2
462,054 - DVU0412 0.55 -1.1
462,054 - DVU0412 0.55 -0.8
462,054 - DVU0412 0.55 -0.9
462,054 - DVU0412 0.55 -3.4
462,181 - DVU0412 0.74 -3.8
462,239 + DVU0412 0.83 -1.6
462,239 + DVU0412 0.83 +0.4
462,274 + DVU0412 0.88 -3.1
462,329 - -0.5
462,360 + -0.3
462,368 - -0.7
462,591 - trk1 DVU0413 0.13 -2.1
462,599 - trk1 DVU0413 0.14 -1.7
462,599 - trk1 DVU0413 0.14 -0.9
462,599 - trk1 DVU0413 0.14 -0.9
462,609 - trk1 DVU0413 0.15 +2.0
462,609 - trk1 DVU0413 0.15 -0.9
462,653 - trk1 DVU0413 0.18 -1.3
462,747 + trk1 DVU0413 0.25 -2.5
462,755 - trk1 DVU0413 0.26 -2.0
462,784 + trk1 DVU0413 0.28 +0.8
462,784 + trk1 DVU0413 0.28 -1.9
462,792 - trk1 DVU0413 0.28 -1.7
462,792 - trk1 DVU0413 0.28 -0.6
462,792 - trk1 DVU0413 0.28 -1.9
462,818 + trk1 DVU0413 0.30 -2.8
462,897 - trk1 DVU0413 0.36 -1.2
462,961 + trk1 DVU0413 0.41 -0.8
462,969 - trk1 DVU0413 0.42 -1.3
462,969 - trk1 DVU0413 0.42 -1.6
462,969 - trk1 DVU0413 0.42 -1.3
462,978 - trk1 DVU0413 0.42 -1.3
462,996 + trk1 DVU0413 0.44 -0.5
463,029 + trk1 DVU0413 0.46 -3.3
463,072 - trk1 DVU0413 0.49 -1.9
463,087 - trk1 DVU0413 0.51 -0.1
463,145 + trk1 DVU0413 0.55 -1.4
463,189 - trk1 DVU0413 0.58 -2.3
463,302 + trk1 DVU0413 0.67 -0.7
463,315 + trk1 DVU0413 0.68 -0.6
463,344 - trk1 DVU0413 0.70 -0.9

Or see this region's nucleotide sequence