Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0002

Experiment: MoYLS4 with DMSO 7.5%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaA-1 and dnaN are separated by 145 nucleotidesdnaN and gyrB are separated by 1 nucleotides DVU0001: dnaA-1 - chromosomal replication initiator protein DnaA (TIGR), at 151 to 1,464 dnaA-1 DVU0002: dnaN - DNA polymerase III, beta subunit (TIGR), at 1,610 to 2,764 dnaN DVU0003: gyrB - DNA gyrase, B subunit (TIGR), at 2,766 to 5,162 gyrB Position (kb) 1 2 3Strain fitness (log2 ratio) -3 -2 -1 0 1at 0.639 kb on + strand, within dnaA-1at 0.750 kb on + strand, within dnaA-1at 0.895 kb on + strand, within dnaA-1at 0.991 kb on - strand, within dnaA-1at 1.065 kb on - strand, within dnaA-1at 1.196 kb on - strand, within dnaA-1at 1.199 kb on + strand, within dnaA-1

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 7.5%
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639 + dnaA-1 DVU0001 0.37 -1.4
750 + dnaA-1 DVU0001 0.46 -1.7
895 + dnaA-1 DVU0001 0.57 -3.5
991 - dnaA-1 DVU0001 0.64 -1.9
1,065 - dnaA-1 DVU0001 0.70 +0.6
1,196 - dnaA-1 DVU0001 0.80 -3.7
1,199 + dnaA-1 DVU0001 0.80 -2.5

Or see this region's nucleotide sequence